Analysis of interatomic Contacts of Structural Units in PDB entry:
7CKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CKP entry

There is 1 chain in PDB entry 7CKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 7CKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 61Right-handed 310
Helix 2
AA2
A
63 73Right-handed alpha
Helix 3
AA3
A
73 79Right-handed alpha
Helix 4
AA4
A
85 98Right-handed alpha
Helix 5
AA5
A
106 126Right-handed alpha
Helix 6
AA6
A
128 135Right-handed alpha
Helix 7
AA7
A
173 195Right-handed alpha
Helix 8
AA8
A
213 229Right-handed alpha
Helix 9
AA9
A
243 247Right-handed 310
Helix 10
AB1
A
262 277Right-handed alpha
Helix 11
AB2
A
290 302Right-handed alpha
Helix 12
AB3
A
316 326Right-handed alpha
Helix 13
AB4
A
335 340Right-handed alpha
Helix 14
AB5
A
341 356Right-handed alpha
Helix 15
AB6
A
371 380Right-handed alpha
Helix 16
AB7
A
392 410Right-handed alpha
Helix 17
AB8
A
411 413Right-handed 310
Helix 18
AB9
A
417 421Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 7CKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 13first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
32 36anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
414 415parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
384 386parallel
Strand 3
A
358 362parallel
Strand 4
A
331 334parallel
Strand 5
A
306 309parallel
Strand 6
A
279 283parallel
Strand 7
A
237 241parallel
Strand 8
A
163 167anti-parallel
Strand 9
A
146 150anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il