Analysis of interatomic Contacts of Structural Units in PDB entry:
7CKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CKV entry

There are 2 chains in PDB entry 7CKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 164SER 313
B
 MET 164SER 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7CKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 180Right-handed alpha
Helix 2
AA2
A
208 212Right-handed 310
Helix 3
AA3
A
220 228Right-handed alpha
Helix 4
AA4
A
246 248Right-handed 310
Helix 5
AA5
A
249 256Right-handed alpha
Helix 6
AA6
A
294 313Right-handed alpha
Helix 7
AA7
B
165 180Right-handed alpha
Helix 8
AA8
B
208 212Right-handed 310
Helix 9
AA9
B
220 228Right-handed alpha
Helix 10
AB1
B
246 248Right-handed 310
Helix 11
AB2
B
249 256Right-handed alpha
Helix 12
AB3
B
294 312Right-handed alpha
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There are 2 sheets in PDB entry 7CKV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 202first strand
Strand 2
A
183 189anti-parallel
Strand 3
A
280 286anti-parallel
Strand 4
A
260 266anti-parallel
Strand 5
A
233 235anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 202first strand
Strand 2
B
183 189anti-parallel
Strand 3
B
280 286anti-parallel
Strand 4
B
260 266anti-parallel
Strand 5
B
233 235anti-parallel
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