Analysis of interatomic Contacts of Structural Units in PDB entry:
7CM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CM9 entry

There are 4 chains in PDB entry 7CM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 35	LYS 727
B	ALA 35	LYS 727
C	ALA 35	LYS 727
D	MET 36	LYS 727

There are114 helices in PDB entry 7CM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	43	Right-handed alpha
Helix 2	AA2	A	44	46	Right-handed 310
Helix 3	AA3	A	59	72	Right-handed alpha
Helix 4	AA4	A	96	100	Right-handed 310
Helix 5	AA5	A	112	126	Right-handed alpha
Helix 6	AA6	A	142	158	Right-handed alpha
Helix 7	AA7	A	175	177	Right-handed 310
Helix 8	AA8	A	203	205	Right-handed 310
Helix 9	AA9	A	206	212	Right-handed alpha
Helix 10	AB1	A	230	240	Right-handed alpha
Helix 11	AB2	A	256	270	Right-handed alpha
Helix 12	AB3	A	292	297	Right-handed alpha
Helix 13	AB4	A	298	310	Right-handed alpha
Helix 14	AB5	A	317	329	Right-handed alpha
Helix 15	AB6	A	345	360	Right-handed alpha
Helix 16	AB7	A	367	378	Right-handed alpha
Helix 17	AB8	A	379	382	Right-handed 310
Helix 18	AB9	A	397	411	Right-handed alpha
Helix 19	AC1	A	429	447	Right-handed alpha
Helix 20	AC2	A	448	450	Right-handed 310
Helix 21	AC3	A	465	475	Right-handed alpha
Helix 22	AC4	A	482	503	Right-handed alpha
Helix 23	AC5	A	524	536	Right-handed alpha
Helix 24	AC6	A	547	559	Right-handed alpha
Helix 25	AC7	A	572	576	Right-handed 310
Helix 26	AC8	A	584	595	Right-handed alpha
Helix 27	AC9	A	637	642	Right-handed alpha
Helix 28	AD1	A	652	662	Right-handed alpha
Helix 29	AD2	A	663	672	Right-handed alpha
Helix 30	AD3	A	680	699	Right-handed alpha
Helix 31	AD4	B	36	42	Right-handed alpha
Helix 32	AD5	B	43	46	Right-handed 310
Helix 33	AD6	B	59	72	Right-handed alpha
Helix 34	AD7	B	96	100	Right-handed 310
Helix 35	AD8	B	112	126	Right-handed alpha
Helix 36	AD9	B	142	160	Right-handed alpha
Helix 37	AE1	B	206	213	Right-handed alpha
Helix 38	AE2	B	230	241	Right-handed alpha
Helix 39	AE3	B	256	270	Right-handed alpha
Helix 40	AE4	B	291	297	Right-handed alpha
Helix 41	AE5	B	298	310	Right-handed alpha
Helix 42	AE6	B	317	329	Right-handed alpha
Helix 43	AE7	B	345	360	Right-handed alpha
Helix 44	AE8	B	367	376	Right-handed alpha
Helix 45	AE9	B	397	412	Right-handed alpha
Helix 46	AF1	B	429	437	Right-handed alpha
Helix 47	AF2	B	437	447	Right-handed alpha
Helix 48	AF3	B	448	450	Right-handed 310
Helix 49	AF4	B	465	475	Right-handed alpha
Helix 50	AF5	B	482	503	Right-handed alpha
Helix 51	AF6	B	524	535	Right-handed alpha
Helix 52	AF7	B	547	556	Right-handed alpha
Helix 53	AF8	B	572	576	Right-handed 310
Helix 54	AF9	B	583	594	Right-handed alpha
Helix 55	AG1	B	637	642	Right-handed alpha
Helix 56	AG2	B	652	662	Right-handed alpha
Helix 57	AG3	B	663	671	Right-handed alpha
Helix 58	AG4	B	680	699	Right-handed alpha
Helix 59	AG5	C	37	42	Right-handed alpha
Helix 60	AG6	C	43	46	Right-handed 310
Helix 61	AG7	C	59	72	Right-handed alpha
Helix 62	AG8	C	96	100	Right-handed 310
Helix 63	AG9	C	112	126	Right-handed alpha
Helix 64	AH1	C	142	158	Right-handed alpha
Helix 65	AH2	C	203	205	Right-handed 310
Helix 66	AH3	C	206	213	Right-handed alpha
Helix 67	AH4	C	230	241	Right-handed alpha
Helix 68	AH5	C	256	270	Right-handed alpha
Helix 69	AH6	C	292	297	Right-handed alpha
Helix 70	AH7	C	298	310	Right-handed alpha
Helix 71	AH8	C	317	329	Right-handed alpha
Helix 72	AH9	C	345	360	Right-handed alpha
Helix 73	AI1	C	367	378	Right-handed alpha
Helix 74	AI2	C	379	382	Right-handed 310
Helix 75	AI3	C	397	410	Right-handed alpha
Helix 76	AI4	C	429	448	Right-handed alpha
Helix 77	AI5	C	465	475	Right-handed alpha
Helix 78	AI6	C	482	501	Right-handed alpha
Helix 79	AI7	C	524	536	Right-handed alpha
Helix 80	AI8	C	547	559	Right-handed alpha
Helix 81	AI9	C	572	576	Right-handed 310
Helix 82	AJ1	C	584	596	Right-handed alpha
Helix 83	AJ2	C	637	642	Right-handed alpha
Helix 84	AJ3	C	652	662	Right-handed alpha
Helix 85	AJ4	C	663	671	Right-handed alpha
Helix 86	AJ5	C	680	699	Right-handed alpha
Helix 87	AJ6	D	37	43	Right-handed alpha
Helix 88	AJ7	D	44	46	Right-handed 310
Helix 89	AJ8	D	59	72	Right-handed alpha
Helix 90	AJ9	D	96	100	Right-handed 310
Helix 91	AK1	D	112	126	Right-handed alpha
Helix 92	AK2	D	142	158	Right-handed alpha
Helix 93	AK3	D	203	213	Right-handed alpha
Helix 94	AK4	D	230	240	Right-handed alpha
Helix 95	AK5	D	256	270	Right-handed alpha
Helix 96	AK6	D	291	297	Right-handed alpha
Helix 97	AK7	D	298	310	Right-handed alpha
Helix 98	AK8	D	317	329	Right-handed alpha
Helix 99	AK9	D	345	360	Right-handed alpha
Helix 100	AL1	D	367	378	Right-handed alpha
Helix 101	AL2	D	397	410	Right-handed alpha
Helix 102	AL3	D	429	437	Right-handed alpha
Helix 103	AL4	D	437	448	Right-handed alpha
Helix 104	AL5	D	465	475	Right-handed alpha
Helix 105	AL6	D	482	503	Right-handed alpha
Helix 106	AL7	D	524	536	Right-handed alpha
Helix 107	AL8	D	547	559	Right-handed alpha
Helix 108	AL9	D	572	576	Right-handed 310
Helix 109	AM1	D	583	596	Right-handed alpha
Helix 110	AM2	D	597	599	Right-handed 310
Helix 111	AM3	D	637	642	Right-handed alpha
Helix 112	AM4	D	652	662	Right-handed alpha
Helix 113	AM5	D	663	671	Right-handed alpha
Helix 114	AM6	D	680	699	Right-handed alpha

There are 27 sheets in PDB entry 7CM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	91	94	anti-parallel
Strand 3	A	77	81	parallel
Strand 4	A	50	54	parallel
Strand 5	A	106	109	parallel
Strand 6	A	130	132	parallel
Strand 7	A	162	164	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	216	222	anti-parallel
Strand 3	A	193	194	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	216	222	anti-parallel
Strand 3	A	197	201	parallel
Strand 4	A	246	251	parallel
Strand 5	A	274	278	parallel
Strand 6	A	312	315	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	339	343	parallel
Strand 3	A	417	421	parallel
Strand 4	A	454	458	parallel
Strand 5	A	478	481	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	723	726	anti-parallel
Strand 3	A	704	712	anti-parallel
Strand 4	A	613	622	anti-parallel
Strand 5	A	626	633	anti-parallel
Strand 6	A	644	647	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	723	726	anti-parallel
Strand 3	A	704	712	anti-parallel
Strand 4	A	717	719	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	545	first strand
Strand 2	A	603	606	anti-parallel
Strand 3	A	565	566	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	77	81	parallel
Strand 4	B	50	54	parallel
Strand 5	B	106	109	parallel
Strand 6	B	130	132	parallel
Strand 7	B	162	164	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	216	222	anti-parallel
Strand 3	B	193	194	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	216	222	anti-parallel
Strand 3	B	197	201	parallel
Strand 4	B	246	251	parallel
Strand 5	B	274	278	parallel
Strand 6	B	313	314	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	339	343	parallel
Strand 3	B	417	421	parallel
Strand 4	B	454	458	parallel
Strand 5	B	478	481	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	723	726	anti-parallel
Strand 3	B	702	712	anti-parallel
Strand 4	B	613	622	anti-parallel
Strand 5	B	626	633	anti-parallel
Strand 6	B	644	647	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	723	726	anti-parallel
Strand 3	B	702	712	anti-parallel
Strand 4	B	717	719	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	545	first strand
Strand 2	B	603	607	anti-parallel
Strand 3	B	562	565	anti-parallel
Strand 4	B	578	582	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	91	94	anti-parallel
Strand 3	C	77	81	parallel
Strand 4	C	50	54	parallel
Strand 5	C	106	109	parallel
Strand 6	C	130	132	parallel
Strand 7	C	162	164	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	216	222	anti-parallel
Strand 3	C	193	194	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	216	222	anti-parallel
Strand 3	C	197	201	parallel
Strand 4	C	246	251	parallel
Strand 5	C	274	278	parallel
Strand 6	C	312	314	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	339	343	parallel
Strand 3	C	417	421	parallel
Strand 4	C	454	458	parallel
Strand 5	C	478	481	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	522	first strand
Strand 2	C	723	726	anti-parallel
Strand 3	C	702	712	anti-parallel
Strand 4	C	613	622	anti-parallel
Strand 5	C	626	633	anti-parallel
Strand 6	C	644	647	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	522	first strand
Strand 2	C	723	726	anti-parallel
Strand 3	C	702	712	anti-parallel
Strand 4	C	717	719	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	545	first strand
Strand 2	C	603	607	anti-parallel
Strand 3	C	562	566	anti-parallel
Strand 4	C	578	582	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	91	94	anti-parallel
Strand 3	D	77	81	parallel
Strand 4	D	50	54	parallel
Strand 5	D	106	109	parallel
Strand 6	D	130	132	parallel
Strand 7	D	162	164	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	217	222	anti-parallel
Strand 3	D	197	201	parallel
Strand 4	D	246	251	parallel
Strand 5	D	274	278	parallel
Strand 6	D	313	314	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	339	343	parallel
Strand 3	D	417	421	parallel
Strand 4	D	454	458	parallel
Strand 5	D	478	481	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	522	first strand
Strand 2	D	723	726	anti-parallel
Strand 3	D	702	712	anti-parallel
Strand 4	D	613	622	anti-parallel
Strand 5	D	626	633	anti-parallel
Strand 6	D	644	647	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	522	first strand
Strand 2	D	723	726	anti-parallel
Strand 3	D	702	712	anti-parallel
Strand 4	D	717	719	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	545	first strand
Strand 2	D	603	606	anti-parallel
Strand 3	D	564	566	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CM9