Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CMC entry

There are 4 chains in PDB entry 7CMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 15	ARG 336
B	GLU 15	ARG 336
C	GLU 15	ARG 336
D	GLU 15	ARG 336

There are 63 helices in PDB entry 7CMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	35	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	41	63	Right-handed alpha
Helix 4	AA4	A	74	80	Right-handed alpha
Helix 5	AA5	A	81	92	Right-handed alpha
Helix 6	AA6	A	101	112	Right-handed alpha
Helix 7	AA7	A	126	130	Right-handed 310
Helix 8	AA8	A	143	168	Right-handed alpha
Helix 9	AA9	A	173	188	Right-handed alpha
Helix 10	AB1	A	189	194	Right-handed 310
Helix 11	AB2	A	195	203	Right-handed alpha
Helix 12	AB3	A	215	229	Right-handed alpha
Helix 13	AB4	A	239	251	Right-handed alpha
Helix 14	AB5	A	261	274	Right-handed alpha
Helix 15	AB6	A	297	301	Right-handed 310
Helix 16	AB7	A	320	334	Right-handed alpha
Helix 17	AB8	B	29	35	Right-handed alpha
Helix 18	AB9	B	36	40	Right-handed 310
Helix 19	AC1	B	41	63	Right-handed alpha
Helix 20	AC2	B	74	80	Right-handed alpha
Helix 21	AC3	B	81	92	Right-handed alpha
Helix 22	AC4	B	101	112	Right-handed alpha
Helix 23	AC5	B	124	131	Right-handed alpha
Helix 24	AC6	B	142	168	Right-handed alpha
Helix 25	AC7	B	173	188	Right-handed alpha
Helix 26	AC8	B	189	194	Right-handed 310
Helix 27	AC9	B	195	203	Right-handed alpha
Helix 28	AD1	B	215	229	Right-handed alpha
Helix 29	AD2	B	237	250	Right-handed alpha
Helix 30	AD3	B	261	272	Right-handed alpha
Helix 31	AD4	B	273	276	Right-handed 310
Helix 32	AD5	B	320	334	Right-handed alpha
Helix 33	AD6	C	29	36	Right-handed alpha
Helix 34	AD7	C	36	41	Right-handed alpha
Helix 35	AD8	C	41	63	Right-handed alpha
Helix 36	AD9	C	74	80	Right-handed alpha
Helix 37	AE1	C	81	92	Right-handed alpha
Helix 38	AE2	C	101	112	Right-handed alpha
Helix 39	AE3	C	125	131	Right-handed alpha
Helix 40	AE4	C	142	168	Right-handed alpha
Helix 41	AE5	C	173	188	Right-handed alpha
Helix 42	AE6	C	189	194	Right-handed 310
Helix 43	AE7	C	195	203	Right-handed alpha
Helix 44	AE8	C	215	229	Right-handed alpha
Helix 45	AE9	C	237	250	Right-handed alpha
Helix 46	AF1	C	261	274	Right-handed alpha
Helix 47	AF2	C	320	334	Right-handed alpha
Helix 48	AF3	D	29	35	Right-handed alpha
Helix 49	AF4	D	36	40	Right-handed 310
Helix 50	AF5	D	41	63	Right-handed alpha
Helix 51	AF6	D	74	80	Right-handed alpha
Helix 52	AF7	D	81	92	Right-handed alpha
Helix 53	AF8	D	101	112	Right-handed alpha
Helix 54	AF9	D	143	168	Right-handed alpha
Helix 55	AG1	D	173	188	Right-handed alpha
Helix 56	AG2	D	189	194	Right-handed 310
Helix 57	AG3	D	195	203	Right-handed alpha
Helix 58	AG4	D	211	214	Right-handed 310
Helix 59	AG5	D	215	229	Right-handed alpha
Helix 60	AG6	D	239	250	Right-handed alpha
Helix 61	AG7	D	261	274	Right-handed alpha
Helix 62	AG8	D	288	292	Right-handed 310
Helix 63	AG9	D	320	334	Right-handed alpha

There are 12 sheets in PDB entry 7CMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	97	99	parallel
Strand 3	A	68	73	parallel
Strand 4	A	254	259	parallel
Strand 5	A	280	285	parallel
Strand 6	A	314	318	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	139	142	anti-parallel
Strand 3	A	133	136	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	235	236	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	97	99	parallel
Strand 3	B	68	73	parallel
Strand 4	B	254	259	parallel
Strand 5	B	280	285	parallel
Strand 6	B	314	318	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	139	141	anti-parallel
Strand 3	B	134	136	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	235	236	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	97	99	parallel
Strand 3	C	67	73	parallel
Strand 4	C	253	259	parallel
Strand 5	C	280	285	parallel
Strand 6	C	314	318	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	139	141	anti-parallel
Strand 3	C	134	136	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	235	236	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	97	99	parallel
Strand 3	D	68	73	parallel
Strand 4	D	254	259	parallel
Strand 5	D	280	285	parallel
Strand 6	D	314	318	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	139	142	anti-parallel
Strand 3	D	133	136	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	235	236	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMC