Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CMG entry

There are 2 chains in PDB entry 7CMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	GLU 518
B	VAL 30	LEU 517

There are 20 helices in PDB entry 7CMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	68	Right-handed alpha
Helix 2	AA2	A	73	105	Right-handed alpha
Helix 3	AA3	A	123	131	Right-handed alpha
Helix 4	AA4	A	136	155	Right-handed alpha
Helix 5	AA5	A	158	168	Right-handed alpha
Helix 6	AA6	A	178	184	Right-handed alpha
Helix 7	AA7	A	188	219	Right-handed alpha
Helix 8	AA8	A	270	274	Right-handed 310
Helix 9	AA9	A	426	432	Right-handed alpha
Helix 10	AB1	A	475	485	Right-handed alpha
Helix 11	AB2	B	31	70	Right-handed alpha
Helix 12	AB3	B	74	111	Right-handed alpha
Helix 13	AB4	B	123	130	Right-handed alpha
Helix 14	AB5	B	135	155	Right-handed alpha
Helix 15	AB6	B	158	169	Right-handed alpha
Helix 16	AB7	B	178	185	Right-handed alpha
Helix 17	AB8	B	188	220	Right-handed alpha
Helix 18	AB9	B	270	274	Right-handed 310
Helix 19	AC1	B	427	433	Right-handed alpha
Helix 20	AC2	B	475	484	Right-handed alpha

There are 16 sheets in PDB entry 7CMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	234	first strand
Strand 2	A	244	254	anti-parallel
Strand 3	B	276	280	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	B	302	314	parallel
Strand 3	B	285	296	anti-parallel
Strand 4	B	261	264	anti-parallel
Strand 5	B	267	268	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	261	264	anti-parallel
Strand 3	A	285	296	anti-parallel
Strand 4	A	302	314	anti-parallel
Strand 5	B	238	240	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	280	first strand
Strand 2	B	244	252	anti-parallel
Strand 3	B	229	234	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	322	first strand
Strand 2	B	334	339	anti-parallel
Strand 3	B	364	367	anti-parallel
Strand 4	B	356	359	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	393	398	parallel
Strand 3	A	375	377	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	360	first strand
Strand 2	A	363	367	anti-parallel
Strand 3	A	334	339	anti-parallel
Strand 4	B	319	322	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	379	382	anti-parallel
Strand 3	A	387	389	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	436	438	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	416	417	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	425	first strand
Strand 2	A	511	516	parallel
Strand 3	A	490	499	anti-parallel
Strand 4	A	449	458	anti-parallel
Strand 5	A	464	468	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	425	first strand
Strand 2	A	511	516	parallel
Strand 3	A	490	499	anti-parallel
Strand 4	A	505	508	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	386	398	parallel
Strand 3	B	374	383	anti-parallel
Strand 4	B	349	352	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	419	first strand
Strand 2	B	404	409	anti-parallel
Strand 3	B	436	438	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	425	first strand
Strand 2	B	511	516	parallel
Strand 3	B	490	499	anti-parallel
Strand 4	B	449	458	anti-parallel
Strand 5	B	464	468	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	425	first strand
Strand 2	B	511	516	parallel
Strand 3	B	490	499	anti-parallel
Strand 4	B	505	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMG