Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CMH entry

There are 2 chains in PDB entry 7CMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 163ALA 631
B
 GLY 41VAL 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7CMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 175Right-handed alpha
Helix 2
AA2
A
178 200Right-handed alpha
Helix 3
AA3
A
202 208Right-handed alpha
Helix 4
AA4
A
231 236Right-handed alpha
Helix 5
AA5
A
241 246Right-handed alpha
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
272 276Right-handed 310
Helix 8
AA8
A
288 301Right-handed alpha
Helix 9
AA9
A
325 342Right-handed alpha
Helix 10
AB1
A
356 372Right-handed alpha
Helix 11
AB2
A
385 393Right-handed alpha
Helix 12
AB3
A
412 428Right-handed alpha
Helix 13
AB4
A
450 459Right-handed alpha
Helix 14
AB5
A
509 516Right-handed alpha
Helix 15
AB6
A
520 534Right-handed alpha
Helix 16
AB7
A
534 539Right-handed alpha
Helix 17
AB8
A
580 584Right-handed 310
Helix 18
AB9
A
585 589Right-handed 310
Helix 19
AC1
B
42 54Right-handed alpha
Helix 20
AC2
B
60 70Right-handed alpha
Helix 21
AC3
B
71 100Right-handed alpha
Helix 22
AC4
B
105 111Right-handed alpha
Helix 23
AC5
B
116 129Right-handed alpha
Helix 24
AC6
B
129 147Right-handed alpha
Helix 25
AC7
B
164 178Right-handed alpha
Helix 26
AC8
B
180 186Right-handed alpha
Helix 27
AC9
B
186 210Right-handed alpha
Helix 28
AD1
B
230 234Right-handed 310
Helix 29
AD2
B
235 240Right-handed alpha
Helix 30
AD3
B
254 258Right-handed 310
Helix 31
AD4
B
263 289Right-handed alpha
Helix 32
AD5
B
292 297Right-handed alpha
Helix 33
AD6
B
301 309Right-handed alpha
Helix 34
AD7
B
313 336Right-handed alpha
Helix 35
AD8
B
338 346Right-handed alpha
Helix 36
AD9
B
364 369Right-handed alpha
Helix 37
AE1
B
369 380Right-handed alpha
Helix 38
AE2
B
384 412Right-handed alpha
Helix 39
AE3
B
426 445Right-handed alpha
Helix 40
AE4
B
445 457Right-handed alpha
Helix 41
AE5
B
458 465Right-handed alpha
Helix 42
AE6
B
473 491Right-handed alpha
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There are 3 sheets in PDB entry 7CMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
463 468parallel
Strand 3
A
432 434parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
304 308parallel
Strand 3
A
346 349parallel
Strand 4
A
377 380parallel
Strand 5
A
400 402parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
552 557anti-parallel
Strand 3
A
563 568anti-parallel
Strand 4
A
623 627anti-parallel
Strand 5
A
593 599anti-parallel
Strand 6
A
609 611anti-parallel
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