Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CMI entry

There are 2 chains in PDB entry 7CMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 163ALA 631
B
 GLY 41VAL 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7CMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 175Right-handed alpha
Helix 2
AA2
A
178 183Right-handed alpha
Helix 3
AA3
A
183 208Right-handed alpha
Helix 4
AA4
A
230 236Right-handed alpha
Helix 5
AA5
A
237 240Right-handed 310
Helix 6
AA6
A
243 247Right-handed 310
Helix 7
AA7
A
248 255Right-handed alpha
Helix 8
AA8
A
287 301Right-handed alpha
Helix 9
AA9
A
325 342Right-handed alpha
Helix 10
AB1
A
356 372Right-handed alpha
Helix 11
AB2
A
385 391Right-handed alpha
Helix 12
AB3
A
412 427Right-handed alpha
Helix 13
AB4
A
452 459Right-handed alpha
Helix 14
AB5
A
509 514Right-handed alpha
Helix 15
AB6
A
519 532Right-handed alpha
Helix 16
AB7
A
534 539Right-handed alpha
Helix 17
AB8
B
42 54Right-handed alpha
Helix 18
AB9
B
61 70Right-handed alpha
Helix 19
AC1
B
71 100Right-handed alpha
Helix 20
AC2
B
105 113Right-handed alpha
Helix 21
AC3
B
116 129Right-handed alpha
Helix 22
AC4
B
129 147Right-handed alpha
Helix 23
AC5
B
157 178Right-handed alpha
Helix 24
AC6
B
179 186Right-handed alpha
Helix 25
AC7
B
188 210Right-handed alpha
Helix 26
AC8
B
233 242Right-handed alpha
Helix 27
AC9
B
254 258Right-handed 310
Helix 28
AD1
B
265 289Right-handed alpha
Helix 29
AD2
B
292 297Right-handed alpha
Helix 30
AD3
B
301 309Right-handed alpha
Helix 31
AD4
B
313 336Right-handed alpha
Helix 32
AD5
B
338 346Right-handed alpha
Helix 33
AD6
B
364 378Right-handed alpha
Helix 34
AD7
B
385 412Right-handed alpha
Helix 35
AD8
B
425 445Right-handed alpha
Helix 36
AD9
B
445 467Right-handed alpha
Helix 37
AE1
B
473 491Right-handed alpha
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There are 3 sheets in PDB entry 7CMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
376 380parallel
Strand 3
A
345 348parallel
Strand 4
A
304 308parallel
Strand 5
A
259 262parallel
Strand 6
A
225 228parallel
Strand 7
A
463 468parallel
Strand 8
A
432 434parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 545first strand
Strand 2
A
552 557anti-parallel
Strand 3
A
563 568anti-parallel
Strand 4
A
622 627anti-parallel
Strand 5
A
593 599anti-parallel
Strand 6
A
609 611anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
493 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il