Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CMK entry

There are 5 chains in PDB entry 7CMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 52	SER 284
B	TYR 27	GLN 330
C	GLY 1	GLN 238
H	GLN 1	ARG 216
L	ASP 1	CYS 213

There are 11 helices in PDB entry 7CMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	69	Right-handed alpha
Helix 2	AA2	A	101	109	Right-handed alpha
Helix 3	AA3	A	210	215	Right-handed 310
Helix 4	AA4	B	158	167	Right-handed alpha
Helix 5	AA5	B	211	216	Right-handed alpha
Helix 6	AA6	B	247	251	Right-handed 310
Helix 7	AA7	C	60	69	Right-handed 310
Helix 8	AA8	C	100	105	Right-handed alpha
Helix 9	AA9	C	146	150	Right-handed 310
Helix 10	AB1	H	87	91	Right-handed 310
Helix 11	AB2	L	120	127	Right-handed alpha

There are 24 sheets in PDB entry 7CMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	A	233	241	anti-parallel
Strand 3	A	118	128	anti-parallel
Strand 4	A	181	184	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	142	148	anti-parallel
Strand 4	A	170	174	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	193	194	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	91	95	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	266	271	parallel
Strand 3	B	168	180	anti-parallel
Strand 4	B	308	324	anti-parallel
Strand 5	B	133	140	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	288	299	anti-parallel
Strand 4	B	188	197	anti-parallel
Strand 5	B	256	260	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	208	216	anti-parallel
Strand 3	C	70	72	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	208	216	anti-parallel
Strand 3	C	114	120	anti-parallel
Strand 4	C	165	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	86	first strand
Strand 2	C	189	199	anti-parallel
Strand 3	C	127	135	anti-parallel
Strand 4	C	152	157	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	221	223	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	49	first strand
Strand 2	H	36	39	anti-parallel
Strand 3	H	93	94	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	73	first strand
Strand 2	H	78	79	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	126	first strand
Strand 2	H	143	144	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	140	first strand
Strand 2	H	185	187	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	168	first strand
Strand 2	H	182	183	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	174	first strand
Strand 2	H	177	179	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	202	first strand
Strand 2	H	207	212	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	105	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	67	74	anti-parallel
Strand 3	L	23	29	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	67	74	anti-parallel
Strand 3	L	61	64	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	47	first strand
Strand 2	L	33	35	anti-parallel
Strand 3	L	87	88	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	136	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	158	163	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	144	146	first strand
Strand 2	L	194	196	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	149	first strand
Strand 2	L	152	153	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMK