Analysis of interatomic Contacts of Structural Units in PDB entry:
7CML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CML entry

There are 2 chains in PDB entry 7CML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 364
B
 MET 1GLU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7CML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 62Right-handed 310
Helix 2
AA2
A
63 80Right-handed alpha
Helix 3
AA3
A
117 121Right-handed 310
Helix 4
AA4
A
124 145Right-handed alpha
Helix 5
AA5
A
153 155Right-handed 310
Helix 6
AA6
A
188 192Right-handed 310
Helix 7
AA7
A
193 198Right-handed alpha
Helix 8
AA8
A
205 221Right-handed alpha
Helix 9
AA9
A
229 242Right-handed alpha
Helix 10
AB1
A
245 251Right-handed alpha
Helix 11
AB2
A
253 263Right-handed alpha
Helix 12
AB3
A
270 275Right-handed alpha
Helix 13
AB4
A
276 280Right-handed 310
Helix 14
AB5
A
284 302Right-handed alpha
Helix 15
AB6
A
305 309Right-handed 310
Helix 16
AB7
A
311 317Right-handed alpha
Helix 17
AB8
A
321 325Right-handed 310
Helix 18
AB9
A
326 331Right-handed alpha
Helix 19
AC1
A
348 362Right-handed alpha
Helix 20
AC2
B
60 62Right-handed 310
Helix 21
AC3
B
63 80Right-handed alpha
Helix 22
AC4
B
124 145Right-handed alpha
Helix 23
AC5
B
153 155Right-handed 310
Helix 24
AC6
B
188 192Right-handed 310
Helix 25
AC7
B
193 198Right-handed alpha
Helix 26
AC8
B
205 221Right-handed alpha
Helix 27
AC9
B
229 242Right-handed alpha
Helix 28
AD1
B
245 251Right-handed alpha
Helix 29
AD2
B
253 263Right-handed alpha
Helix 30
AD3
B
270 275Right-handed alpha
Helix 31
AD4
B
276 280Right-handed 310
Helix 32
AD5
B
284 302Right-handed alpha
Helix 33
AD6
B
305 309Right-handed 310
Helix 34
AD7
B
311 317Right-handed alpha
Helix 35
AD8
B
321 325Right-handed 310
Helix 36
AD9
B
326 331Right-handed alpha
Helix 37
AE1
B
348 362Right-handed alpha
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There are 6 sheets in PDB entry 7CML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
18 23anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
39 45anti-parallel
Strand 3
A
50 58anti-parallel
Strand 4
A
103 109anti-parallel
Strand 5
A
88 92anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
165 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
18 23anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
39 45anti-parallel
Strand 3
B
50 58anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
88 92anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
165 167anti-parallel
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