Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CMP entry

There are 4 chains in PDB entry 7CMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 48	ALA 421
B	ARG 48	ALA 421
C	ARG 48	ALA 421
D	ARG 48	ARG 208

There are 52 helices in PDB entry 7CMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	54	Right-handed 310
Helix 2	AA2	A	60	66	Right-handed alpha
Helix 3	AA3	A	67	70	Right-handed 310
Helix 4	AA4	A	76	93	Right-handed alpha
Helix 5	AA5	A	129	137	Right-handed alpha
Helix 6	AA6	A	158	166	Right-handed alpha
Helix 7	AA7	A	215	218	Right-handed 310
Helix 8	AA8	A	224	239	Right-handed alpha
Helix 9	AA9	A	262	271	Right-handed alpha
Helix 10	AB1	A	319	341	Right-handed alpha
Helix 11	AB2	A	351	357	Right-handed alpha
Helix 12	AB3	A	383	404	Right-handed alpha
Helix 13	AB4	A	404	421	Right-handed alpha
Helix 14	AB5	B	50	54	Right-handed 310
Helix 15	AB6	B	60	66	Right-handed alpha
Helix 16	AB7	B	67	70	Right-handed 310
Helix 17	AB8	B	76	93	Right-handed alpha
Helix 18	AB9	B	129	137	Right-handed alpha
Helix 19	AC1	B	158	166	Right-handed alpha
Helix 20	AC2	B	215	218	Right-handed 310
Helix 21	AC3	B	224	239	Right-handed alpha
Helix 22	AC4	B	262	271	Right-handed alpha
Helix 23	AC5	B	320	339	Right-handed alpha
Helix 24	AC6	B	351	357	Right-handed alpha
Helix 25	AC7	B	382	404	Right-handed alpha
Helix 26	AC8	B	404	421	Right-handed alpha
Helix 27	AC9	C	50	54	Right-handed 310
Helix 28	AD1	C	60	66	Right-handed alpha
Helix 29	AD2	C	67	70	Right-handed 310
Helix 30	AD3	C	76	93	Right-handed alpha
Helix 31	AD4	C	129	137	Right-handed alpha
Helix 32	AD5	C	158	166	Right-handed alpha
Helix 33	AD6	C	215	218	Right-handed 310
Helix 34	AD7	C	224	239	Right-handed alpha
Helix 35	AD8	C	262	271	Right-handed alpha
Helix 36	AD9	C	319	340	Right-handed alpha
Helix 37	AE1	C	351	357	Right-handed alpha
Helix 38	AE2	C	383	404	Right-handed alpha
Helix 39	AE3	C	404	420	Right-handed alpha
Helix 40	AE4	D	50	54	Right-handed 310
Helix 41	AE5	D	60	66	Right-handed alpha
Helix 42	AE6	D	67	70	Right-handed 310
Helix 43	AE7	D	76	93	Right-handed alpha
Helix 44	AE8	D	129	137	Right-handed alpha
Helix 45	AE9	D	158	166	Right-handed alpha
Helix 46	AF1	D	215	218	Right-handed 310
Helix 47	AF2	D	224	239	Right-handed alpha
Helix 48	AF3	D	262	271	Right-handed alpha
Helix 49	AF4	D	319	341	Right-handed alpha
Helix 50	AF5	D	351	357	Right-handed alpha
Helix 51	AF6	D	382	404	Right-handed alpha
Helix 52	AF7	D	404	421	Right-handed alpha

There are 16 sheets in PDB entry 7CMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	B	140	141	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	179	186	anti-parallel
Strand 3	A	195	199	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	190	first strand
Strand 2	A	179	186	anti-parallel
Strand 3	A	167	176	anti-parallel
Strand 4	A	206	213	anti-parallel
Strand 5	A	109	113	anti-parallel
Strand 6	A	98	103	anti-parallel
Strand 7	A	243	248	parallel
Strand 8	A	253	257	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	B	55	56	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	287	first strand
Strand 2	A	291	299	anti-parallel
Strand 3	A	359	367	anti-parallel
Strand 4	A	307	311	parallel
Strand 5	A	314	315	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	179	186	anti-parallel
Strand 3	B	195	199	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	179	186	anti-parallel
Strand 3	B	167	176	anti-parallel
Strand 4	B	206	213	anti-parallel
Strand 5	B	109	113	anti-parallel
Strand 6	B	98	103	anti-parallel
Strand 7	B	243	248	parallel
Strand 8	B	253	257	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	287	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	359	367	anti-parallel
Strand 4	B	307	311	parallel
Strand 5	B	314	315	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	D	140	141	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	179	186	anti-parallel
Strand 3	C	195	199	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	179	186	anti-parallel
Strand 3	C	167	176	anti-parallel
Strand 4	C	206	213	anti-parallel
Strand 5	C	109	113	anti-parallel
Strand 6	C	98	103	anti-parallel
Strand 7	C	243	248	parallel
Strand 8	C	253	257	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	D	55	56	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	287	first strand
Strand 2	C	291	299	anti-parallel
Strand 3	C	359	367	anti-parallel
Strand 4	C	307	311	parallel
Strand 5	C	314	315	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	179	186	anti-parallel
Strand 3	D	195	199	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	179	186	anti-parallel
Strand 3	D	167	176	anti-parallel
Strand 4	D	206	213	anti-parallel
Strand 5	D	109	113	anti-parallel
Strand 6	D	98	103	anti-parallel
Strand 7	D	243	248	parallel
Strand 8	D	253	257	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	287	first strand
Strand 2	D	291	299	anti-parallel
Strand 3	D	359	367	anti-parallel
Strand 4	D	307	311	parallel
Strand 5	D	314	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMP