Analysis of interatomic Contacts of Structural Units in PDB entry:
7CMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CMY entry

There are 2 chains in PDB entry 7CMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LYS 2PHE 423
A
 ASN 3THR 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7CMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
2 16Right-handed alpha
Helix 2
AA2
C
17 20Right-handed 310
Helix 3
AA3
C
27 36Right-handed alpha
Helix 4
AA4
C
42 57Right-handed alpha
Helix 5
AA5
C
69 80Right-handed alpha
Helix 6
AA6
C
87 95Right-handed alpha
Helix 7
AA7
C
111 135Right-handed alpha
Helix 8
AA8
C
155 169Right-handed alpha
Helix 9
AA9
C
180 184Right-handed 310
Helix 10
AB1
C
196 214Right-handed alpha
Helix 11
AB2
C
237 242Right-handed 310
Helix 12
AB3
C
259 271Right-handed alpha
Helix 13
AB4
C
272 274Right-handed 310
Helix 14
AB5
C
285 300Right-handed alpha
Helix 15
AB6
C
326 333Right-handed alpha
Helix 16
AB7
C
343 364Right-handed alpha
Helix 17
AB8
C
364 378Right-handed alpha
Helix 18
AB9
C
379 382Right-handed 310
Helix 19
AC1
C
387 392Right-handed alpha
Helix 20
AC2
C
393 406Right-handed alpha
Helix 21
AC3
C
417 422Right-handed alpha
Helix 22
AC4
A
4 16Right-handed alpha
Helix 23
AC5
A
17 20Right-handed 310
Helix 24
AC6
A
27 36Right-handed alpha
Helix 25
AC7
A
42 59Right-handed alpha
Helix 26
AC8
A
69 80Right-handed alpha
Helix 27
AC9
A
87 95Right-handed alpha
Helix 28
AD1
A
111 135Right-handed alpha
Helix 29
AD2
A
155 170Right-handed alpha
Helix 30
AD3
A
180 184Right-handed 310
Helix 31
AD4
A
196 214Right-handed alpha
Helix 32
AD5
A
237 242Right-handed alpha
Helix 33
AD6
A
259 271Right-handed alpha
Helix 34
AD7
A
272 274Right-handed 310
Helix 35
AD8
A
285 300Right-handed alpha
Helix 36
AD9
A
320 326Right-handed alpha
Helix 37
AE1
A
326 333Right-handed alpha
Helix 38
AE2
A
343 364Right-handed alpha
Helix 39
AE3
A
364 379Right-handed alpha
Helix 40
AE4
A
380 382Right-handed 310
Helix 41
AE5
A
387 392Right-handed alpha
Helix 42
AE6
A
393 406Right-handed alpha
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There are 4 sheets in PDB entry 7CMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 65first strand
Strand 2
C
336 341parallel
Strand 3
C
304 308parallel
Strand 4
C
276 279parallel
Strand 5
C
219 224parallel
Strand 6
C
173 177parallel
Strand 7
C
145 148parallel
Strand 8
C
84 86parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 232first strand
Strand 2
C
254 256anti-parallel
Strand 3
C
244 248anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
336 341parallel
Strand 3
A
304 308parallel
Strand 4
A
276 279parallel
Strand 5
A
219 224parallel
Strand 6
A
173 177parallel
Strand 7
A
145 148parallel
Strand 8
A
84 86parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
254 256anti-parallel
Strand 3
A
244 248anti-parallel
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