Analysis of interatomic Contacts of Structural Units in PDB entry:
7CNE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CNE entry

There is 1 chain in PDB entry 7CNE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 48ASN 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 7CNE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 81Right-handed alpha
Helix 2
AA2
A
82 85Right-handed 310
Helix 3
AA3
A
97 108Right-handed alpha
Helix 4
AA4
A
163 169Right-handed 310
Helix 5
AA5
A
202 222Right-handed alpha
Helix 6
AA6
A
243 253Right-handed alpha
Helix 7
AA7
A
272 279Right-handed alpha
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There are 3 sheets in PDB entry 7CNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
144 147anti-parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
53 60parallel
Strand 5
A
334 338anti-parallel
Strand 6
A
302 306anti-parallel
Strand 7
A
259 262parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
151 158parallel
Strand 3
A
172 180anti-parallel
Strand 4
A
183 191anti-parallel
Strand 5
A
229 235parallel
Strand 6
A
288 292anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
322 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il