Analysis of interatomic Contacts of Structural Units in PDB entry:
7CNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CNP entry

There are 3 chains in PDB entry 7CNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11SER 569
B
 GLU 12SER 569
C
 GLU 12SER 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 68 helices in PDB entry 7CNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
72 83Right-handed alpha
Helix 3
AA3
A
97 110Right-handed alpha
Helix 4
AA4
A
120 128Right-handed alpha
Helix 5
AA5
A
160 169Right-handed alpha
Helix 6
AA6
A
172 190Right-handed alpha
Helix 7
AA7
A
209 222Right-handed alpha
Helix 8
AA8
A
248 265Right-handed alpha
Helix 9
AA9
A
274 278Right-handed 310
Helix 10
AB1
A
292 302Right-handed alpha
Helix 11
AB2
A
313 322Right-handed alpha
Helix 12
AB3
A
327 336Right-handed 310
Helix 13
AB4
A
352 365Right-handed alpha
Helix 14
AB5
A
375 379Right-handed 310
Helix 15
AB6
A
381 396Right-handed alpha
Helix 16
AB7
A
424 435Right-handed alpha
Helix 17
AB8
A
453 465Right-handed alpha
Helix 18
AB9
A
480 490Right-handed alpha
Helix 19
AC1
A
491 499Right-handed alpha
Helix 20
AC2
A
528 540Right-handed alpha
Helix 21
AC3
A
547 558Right-handed alpha
Helix 22
AC4
A
565 569Right-handed 310
Helix 23
AC5
B
33 38Right-handed alpha
Helix 24
AC6
B
72 83Right-handed alpha
Helix 25
AC7
B
97 111Right-handed alpha
Helix 26
AC8
B
120 130Right-handed alpha
Helix 27
AC9
B
160 168Right-handed alpha
Helix 28
AD1
B
172 189Right-handed alpha
Helix 29
AD2
B
209 222Right-handed alpha
Helix 30
AD3
B
241 246Right-handed alpha
Helix 31
AD4
B
248 265Right-handed alpha
Helix 32
AD5
B
274 278Right-handed 310
Helix 33
AD6
B
292 302Right-handed alpha
Helix 34
AD7
B
313 322Right-handed alpha
Helix 35
AD8
B
327 336Right-handed 310
Helix 36
AD9
B
352 365Right-handed alpha
Helix 37
AE1
B
375 379Right-handed 310
Helix 38
AE2
B
381 396Right-handed alpha
Helix 39
AE3
B
424 435Right-handed alpha
Helix 40
AE4
B
453 465Right-handed alpha
Helix 41
AE5
B
480 491Right-handed alpha
Helix 42
AE6
B
491 499Right-handed alpha
Helix 43
AE7
B
528 540Right-handed alpha
Helix 44
AE8
B
547 558Right-handed alpha
Helix 45
AE9
B
565 569Right-handed 310
Helix 46
AF1
C
33 38Right-handed alpha
Helix 47
AF2
C
72 83Right-handed alpha
Helix 48
AF3
C
97 110Right-handed alpha
Helix 49
AF4
C
120 129Right-handed alpha
Helix 50
AF5
C
160 168Right-handed alpha
Helix 51
AF6
C
172 189Right-handed alpha
Helix 52
AF7
C
209 222Right-handed alpha
Helix 53
AF8
C
241 246Right-handed alpha
Helix 54
AF9
C
248 265Right-handed alpha
Helix 55
AG1
C
274 278Right-handed 310
Helix 56
AG2
C
292 302Right-handed alpha
Helix 57
AG3
C
313 322Right-handed alpha
Helix 58
AG4
C
327 336Right-handed 310
Helix 59
AG5
C
352 365Right-handed alpha
Helix 60
AG6
C
375 379Right-handed 310
Helix 61
AG7
C
381 396Right-handed alpha
Helix 62
AG8
C
424 435Right-handed alpha
Helix 63
AG9
C
453 465Right-handed alpha
Helix 64
AH1
C
480 490Right-handed alpha
Helix 65
AH2
C
491 499Right-handed alpha
Helix 66
AH3
C
528 540Right-handed alpha
Helix 67
AH4
C
547 558Right-handed alpha
Helix 68
AH5
C
565 569Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 7CNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
89 92parallel
Strand 4
A
61 63parallel
Strand 5
A
21 27parallel
Strand 6
A
132 135anti-parallel
Strand 7
A
139 142anti-parallel
Strand 8
A
145 150anti-parallel
Strand 9
A
13 17parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
323 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
200 202parallel
Strand 3
A
289 290parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
370 373parallel
Strand 3
A
339 343parallel
Strand 4
A
419 423parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 505first strand
Strand 2
A
474 479parallel
Strand 3
A
444 447parallel
Strand 4
A
523 526parallel
Strand 5
A
542 545parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
116 119anti-parallel
Strand 3
B
89 92parallel
Strand 4
B
61 63parallel
Strand 5
B
25 27parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
133 135anti-parallel
Strand 3
B
139 142anti-parallel
Strand 4
B
145 148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
323 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
200 202parallel
Strand 3
B
289 290parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 403first strand
Strand 2
B
370 373parallel
Strand 3
B
339 343parallel
Strand 4
B
419 423parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 504first strand
Strand 2
B
474 479parallel
Strand 3
B
444 452parallel
Strand 4
B
523 526parallel
Strand 5
B
542 545parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
116 119anti-parallel
Strand 3
C
89 92parallel
Strand 4
C
61 63parallel
Strand 5
C
21 27parallel
Strand 6
C
132 135anti-parallel
Strand 7
C
139 142anti-parallel
Strand 8
C
145 150anti-parallel
Strand 9
C
13 17parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
323 325anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
230 232first strand
Strand 2
C
200 202parallel
Strand 3
C
289 290parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
402 403first strand
Strand 2
C
370 373parallel
Strand 3
C
339 343parallel
Strand 4
C
419 423parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
501 504first strand
Strand 2
C
474 479parallel
Strand 3
C
444 452parallel
Strand 4
C
523 526parallel
Strand 5
C
542 545parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il