Analysis of interatomic Contacts of Structural Units in PDB entry:
7CNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CNY entry

There are 4 chains in PDB entry 7CNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 253
B
 THR 255THR 287
C
 LEU 7GLY 253
D
 THR 255THR 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7CNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
14 27Right-handed alpha
Helix 3
AA3
A
31 46Right-handed alpha
Helix 4
AA4
A
48 52Right-handed 310
Helix 5
AA5
A
56 60Right-handed 310
Helix 6
AA6
A
62 68Right-handed alpha
Helix 7
AA7
A
72 76Right-handed 310
Helix 8
AA8
A
114 118Right-handed alpha
Helix 9
AA9
A
121 127Right-handed alpha
Helix 10
AB1
A
168 175Right-handed alpha
Helix 11
AB2
A
177 182Right-handed alpha
Helix 12
AB3
C
8 13Right-handed alpha
Helix 13
AB4
C
14 27Right-handed alpha
Helix 14
AB5
C
30 46Right-handed alpha
Helix 15
AB6
C
48 52Right-handed 310
Helix 16
AB7
C
56 60Right-handed 310
Helix 17
AB8
C
62 68Right-handed alpha
Helix 18
AB9
C
72 76Right-handed 310
Helix 19
AC1
C
114 118Right-handed alpha
Helix 20
AC2
C
121 127Right-handed alpha
Helix 21
AC3
C
168 175Right-handed alpha
Helix 22
AC4
C
177 182Right-handed alpha
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There are 10 sheets in PDB entry 7CNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
B
282 286anti-parallel
Strand 3
B
265 267anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
152 160anti-parallel
Strand 3
A
239 241anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
152 160anti-parallel
Strand 3
A
184 191anti-parallel
Strand 4
A
194 201anti-parallel
Strand 5
B
256 260anti-parallel
Strand 6
A
132 137anti-parallel
Strand 7
A
91 98anti-parallel
Strand 8
B
276 277anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
110 113anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
246 251anti-parallel
Strand 3
A
208 211anti-parallel
Strand 4
A
215 218anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
D
282 286anti-parallel
Strand 3
D
265 267anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 229first strand
Strand 2
C
152 160anti-parallel
Strand 3
C
240 241anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 229first strand
Strand 2
C
152 160anti-parallel
Strand 3
C
184 191anti-parallel
Strand 4
C
194 201anti-parallel
Strand 5
D
256 260anti-parallel
Strand 6
C
132 137anti-parallel
Strand 7
C
91 98anti-parallel
Strand 8
D
276 277anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 107first strand
Strand 2
C
110 113anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 147first strand
Strand 2
C
246 251anti-parallel
Strand 3
C
208 211anti-parallel
Strand 4
C
215 218anti-parallel
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