Analysis of interatomic Contacts of Structural Units in PDB entry:
7CO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CO5 entry

There are 12 chains in PDB entry 7CO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLU 5	PHE 10
H	VAL 53	PRO 377
A	ASP 4	PHE 10
B	VAL 53	PRO 377
C	ASP 4	PHE 10
D	VAL 53	PRO 377
E	GLU 5	PHE 10
F	VAL 53	PRO 377
I	GLU 5	PHE 10
J	VAL 53	PRO 377
K	VAL 2	PHE 10
L	VAL 53	PRO 377

There are 42 helices in PDB entry 7CO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	55	63	Right-handed alpha
Helix 2	AA2	H	121	126	Right-handed alpha
Helix 3	AA3	H	186	190	Right-handed 310
Helix 4	AA4	H	261	273	Right-handed alpha
Helix 5	AA5	H	314	319	Right-handed alpha
Helix 6	AA6	H	337	347	Right-handed alpha
Helix 7	AA7	B	55	63	Right-handed alpha
Helix 8	AA8	B	121	126	Right-handed alpha
Helix 9	AA9	B	186	190	Right-handed 310
Helix 10	AB1	B	261	275	Right-handed alpha
Helix 11	AB2	B	314	319	Right-handed alpha
Helix 12	AB3	B	337	347	Right-handed alpha
Helix 13	AB4	D	55	63	Right-handed alpha
Helix 14	AB5	D	121	126	Right-handed alpha
Helix 15	AB6	D	171	175	Right-handed 310
Helix 16	AB7	D	261	275	Right-handed alpha
Helix 17	AB8	D	290	296	Right-handed 310
Helix 18	AB9	D	314	319	Right-handed alpha
Helix 19	AC1	D	337	348	Right-handed alpha
Helix 20	AC2	F	55	63	Right-handed alpha
Helix 21	AC3	F	122	126	Right-handed alpha
Helix 22	AC4	F	186	190	Right-handed 310
Helix 23	AC5	F	261	275	Right-handed alpha
Helix 24	AC6	F	290	294	Right-handed 310
Helix 25	AC7	F	314	319	Right-handed alpha
Helix 26	AC8	F	337	347	Right-handed alpha
Helix 27	AC9	J	55	63	Right-handed alpha
Helix 28	AD1	J	64	66	Right-handed 310
Helix 29	AD2	J	122	126	Right-handed alpha
Helix 30	AD3	J	171	175	Right-handed 310
Helix 31	AD4	J	186	190	Right-handed 310
Helix 32	AD5	J	261	275	Right-handed alpha
Helix 33	AD6	J	290	298	Right-handed alpha
Helix 34	AD7	J	314	320	Right-handed alpha
Helix 35	AD8	J	337	348	Right-handed alpha
Helix 36	AD9	L	55	63	Right-handed alpha
Helix 37	AE1	L	121	126	Right-handed alpha
Helix 38	AE2	L	186	190	Right-handed 310
Helix 39	AE3	L	261	275	Right-handed alpha
Helix 40	AE4	L	298	302	Right-handed 310
Helix 41	AE5	L	314	320	Right-handed alpha
Helix 42	AE6	L	337	347	Right-handed alpha

There are 31 sheets in PDB entry 7CO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	H	284	288	anti-parallel
Strand 3	H	305	311	anti-parallel
Strand 4	H	326	330	anti-parallel
Strand 5	H	353	360	anti-parallel
Strand 6	H	363	370	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	H	284	288	anti-parallel
Strand 3	H	305	311	anti-parallel
Strand 4	F	88	89	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	76	first strand
Strand 2	H	99	111	anti-parallel
Strand 3	H	117	120	anti-parallel
Strand 4	H	154	158	anti-parallel
Strand 5	H	140	149	anti-parallel
Strand 6	H	131	134	anti-parallel
Strand 7	H	66	76	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	89	first strand
Strand 2	F	305	311	anti-parallel
Strand 3	F	284	287	anti-parallel
Strand 4	E	7	9	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	89	first strand
Strand 2	F	305	311	anti-parallel
Strand 3	F	326	329	anti-parallel
Strand 4	F	353	360	anti-parallel
Strand 5	F	363	370	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	185	first strand
Strand 2	H	193	204	anti-parallel
Strand 3	H	215	218	anti-parallel
Strand 4	H	256	260	anti-parallel
Strand 5	H	238	245	anti-parallel
Strand 6	H	230	233	anti-parallel
Strand 7	H	180	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	280	281	first strand
Strand 2	H	372	373	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	305	311	anti-parallel
Strand 4	B	326	330	anti-parallel
Strand 5	B	353	360	anti-parallel
Strand 6	B	363	370	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	305	311	anti-parallel
Strand 4	D	88	89	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	76	first strand
Strand 2	B	99	111	anti-parallel
Strand 3	B	117	120	anti-parallel
Strand 4	B	154	158	anti-parallel
Strand 5	B	140	149	anti-parallel
Strand 6	B	131	134	anti-parallel
Strand 7	B	66	76	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	D	306	311	anti-parallel
Strand 3	D	284	287	anti-parallel
Strand 4	C	8	9	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	193	204	anti-parallel
Strand 3	B	215	218	anti-parallel
Strand 4	B	256	260	anti-parallel
Strand 5	B	238	245	anti-parallel
Strand 6	B	230	233	anti-parallel
Strand 7	B	180	185	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	372	373	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	76	first strand
Strand 2	D	99	111	anti-parallel
Strand 3	D	117	120	anti-parallel
Strand 4	D	154	158	anti-parallel
Strand 5	D	140	149	anti-parallel
Strand 6	D	131	134	anti-parallel
Strand 7	D	66	76	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	184	first strand
Strand 2	D	195	204	anti-parallel
Strand 3	D	215	218	anti-parallel
Strand 4	D	256	260	anti-parallel
Strand 5	D	238	245	anti-parallel
Strand 6	D	230	232	anti-parallel
Strand 7	D	180	184	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	281	first strand
Strand 2	D	372	373	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	326	330	anti-parallel
Strand 3	D	353	360	anti-parallel
Strand 4	D	363	370	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	76	first strand
Strand 2	F	99	111	anti-parallel
Strand 3	F	118	121	anti-parallel
Strand 4	F	154	158	anti-parallel
Strand 5	F	140	149	anti-parallel
Strand 6	F	131	134	anti-parallel
Strand 7	F	66	76	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	180	185	first strand
Strand 2	F	193	204	anti-parallel
Strand 3	F	215	218	anti-parallel
Strand 4	F	256	260	anti-parallel
Strand 5	F	238	245	anti-parallel
Strand 6	F	229	233	anti-parallel
Strand 7	F	180	185	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	280	281	first strand
Strand 2	F	372	373	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	9	first strand
Strand 2	J	284	288	anti-parallel
Strand 3	J	305	311	anti-parallel
Strand 4	L	88	89	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	108	first strand
Strand 2	J	68	75	anti-parallel
Strand 3	J	132	134	anti-parallel
Strand 4	J	140	142	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	89	first strand
Strand 2	L	305	311	anti-parallel
Strand 3	L	284	288	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	89	first strand
Strand 2	L	305	311	anti-parallel
Strand 3	L	326	330	anti-parallel
Strand 4	L	353	360	anti-parallel
Strand 5	L	363	370	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	111	first strand
Strand 2	J	117	121	anti-parallel
Strand 3	J	154	158	anti-parallel
Strand 4	J	144	149	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	180	185	first strand
Strand 2	J	193	204	anti-parallel
Strand 3	J	215	218	anti-parallel
Strand 4	J	256	260	anti-parallel
Strand 5	J	238	245	anti-parallel
Strand 6	J	230	233	anti-parallel
Strand 7	J	180	185	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	280	281	first strand
Strand 2	J	372	373	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	334	first strand
Strand 2	J	326	330	anti-parallel
Strand 3	J	353	360	anti-parallel
Strand 4	J	363	370	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	140	142	first strand
Strand 2	L	132	134	anti-parallel
Strand 3	L	66	76	anti-parallel
Strand 4	L	99	111	anti-parallel
Strand 5	L	117	120	anti-parallel
Strand 6	L	154	158	anti-parallel
Strand 7	L	144	149	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	180	185	first strand
Strand 2	L	193	201	anti-parallel
Strand 3	L	216	218	anti-parallel
Strand 4	L	256	260	anti-parallel
Strand 5	L	238	245	anti-parallel
Strand 6	L	230	233	anti-parallel
Strand 7	L	180	185	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	280	281	first strand
Strand 2	L	372	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CO5