Analysis of interatomic Contacts of Structural Units in PDB entry:
7COE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7COE entry

There are 6 chains in PDB entry 7COE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	LYS 232
L	GLU 1	GLU 214
A	VAL 381	LYS 587
B	GLN 1	LYS 232
C	GLU 1	GLY 213
D	VAL 381	LYS 587

There are 32 helices in PDB entry 7COE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	62	65	Right-handed 310
Helix 2	AA2	H	74	76	Right-handed 310
Helix 3	AA3	H	87	91	Right-handed 310
Helix 4	AA4	H	174	176	Right-handed 310
Helix 5	AA5	H	205	208	Right-handed 310
Helix 6	AA6	H	219	222	Right-handed 310
Helix 7	AA7	L	29	32	Right-handed 310
Helix 8	AA8	L	80	84	Right-handed 310
Helix 9	AA9	L	122	128	Right-handed alpha
Helix 10	AB1	L	184	188	Right-handed alpha
Helix 11	AB2	A	385	390	Right-handed 310
Helix 12	AB3	A	395	399	Right-handed 310
Helix 13	AB4	A	410	417	Right-handed alpha
Helix 14	AB5	A	429	434	Right-handed alpha
Helix 15	AB6	A	449	456	Right-handed 310
Helix 16	AB7	A	462	468	Right-handed alpha
Helix 17	AB8	A	546	550	Right-handed 310
Helix 18	AB9	B	74	76	Right-handed 310
Helix 19	AC1	B	87	91	Right-handed 310
Helix 20	AC2	B	174	176	Right-handed 310
Helix 21	AC3	B	219	222	Right-handed 310
Helix 22	AC4	C	29	32	Right-handed 310
Helix 23	AC5	C	80	84	Right-handed 310
Helix 24	AC6	C	122	128	Right-handed alpha
Helix 25	AC7	C	184	188	Right-handed alpha
Helix 26	AC8	D	385	390	Right-handed 310
Helix 27	AC9	D	395	399	Right-handed 310
Helix 28	AD1	D	410	417	Right-handed alpha
Helix 29	AD2	D	429	434	Right-handed alpha
Helix 30	AD3	D	449	456	Right-handed 310
Helix 31	AD4	D	462	468	Right-handed alpha
Helix 32	AD5	D	546	550	Right-handed 310

There are 28 sheets in PDB entry 7COE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	118	121	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	112	113	first strand
Strand 2	A	512	515	anti-parallel
Strand 3	A	496	506	anti-parallel
Strand 4	A	553	562	anti-parallel
Strand 5	A	540	544	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	142	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	181	183	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	142	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	187	188	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	172	first strand
Strand 2	H	212	218	anti-parallel
Strand 3	H	223	229	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	404	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	568	576	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	419	426	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	409	first strand
Strand 2	A	584	586	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	125	129	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	125	129	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	118	121	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	D	512	515	anti-parallel
Strand 3	D	496	506	anti-parallel
Strand 4	D	553	562	anti-parallel
Strand 5	D	540	544	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	153	163	anti-parallel
Strand 3	B	194	203	anti-parallel
Strand 4	B	181	183	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	153	163	anti-parallel
Strand 3	B	194	203	anti-parallel
Strand 4	B	187	188	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	212	218	anti-parallel
Strand 3	B	223	229	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	103	107	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	50	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	103	107	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	98	99	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	146	151	anti-parallel
Strand 3	C	192	198	anti-parallel
Strand 4	C	206	211	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	404	first strand
Strand 2	D	440	447	anti-parallel
Strand 3	D	568	576	anti-parallel
Strand 4	D	477	483	anti-parallel
Strand 5	D	419	426	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	409	first strand
Strand 2	D	584	586	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7COE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7COE