Analysis of interatomic Contacts of Structural Units in PDB entry:
7COF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7COF entry

There is 1 chain in PDB entry 7COF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7COF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
60 77Right-handed alpha
Helix 4
AA4
A
87 100Right-handed alpha
Helix 5
AA5
A
117 129Right-handed alpha
Helix 6
AA6
A
133 151Right-handed alpha
Helix 7
AA7
A
159 168Right-handed alpha
Helix 8
AA8
A
168 179Right-handed alpha
Helix 9
AA9
A
236 242Right-handed alpha
Helix 10
AB1
A
243 258Right-handed alpha
Helix 11
AB2
A
268 273Right-handed alpha
Helix 12
AB3
A
287 291Right-handed 310
Helix 13
AB4
A
303 318Right-handed alpha
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There are 4 sheets in PDB entry 7COF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
11 14parallel
Strand 3
A
81 86parallel
Strand 4
A
104 110parallel
Strand 5
A
202 211parallel
Strand 6
A
196 199anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
11 14parallel
Strand 3
A
81 86parallel
Strand 4
A
104 110parallel
Strand 5
A
202 211parallel
Strand 6
A
276 282parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
27 28anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 220first strand
Strand 2
A
223 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il