Analysis of interatomic Contacts of Structural Units in PDB entry:
7CP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CP3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 7CP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 300LYS 473
A
 LEU 475ARG 589
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7CP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
300 309Right-handed alpha
Helix 2
AA2
A
316 319Right-handed 310
Helix 3
AA3
A
359 361Right-handed 310
Helix 4
AA4
A
362 369Right-handed alpha
Helix 5
AA5
A
403 408Right-handed alpha
Helix 6
AA6
A
413 434Right-handed alpha
Helix 7
AA7
A
442 444Right-handed 310
Helix 8
AA8
A
458 462Right-handed 310
Helix 9
AA9
A
478 482Right-handed 310
Helix 10
AB1
A
483 488Right-handed alpha
Helix 11
AB2
A
494 511Right-handed alpha
Helix 12
AB3
A
519 525Right-handed alpha
Helix 13
AB4
A
537 541Right-handed 310
Helix 14
AB5
A
542 551Right-handed alpha
Helix 15
AB6
A
556 560Right-handed 310
Helix 16
AB7
A
562 567Right-handed alpha
Helix 17
AB8
A
568 569Right-handed 310
Helix 18
AB9
A
570 574Right-handed 310
Helix 19
AC1
A
577 585Right-handed 310
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There are 3 sheets in PDB entry 7CP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 330first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
346 353anti-parallel
Strand 4
A
390 396anti-parallel
Strand 5
A
381 387anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
463 464anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
454 456anti-parallel
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