Analysis of interatomic Contacts of Structural Units in PDB entry:
7CP7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CP7 entry

There is 1 chain in PDB entry 7CP7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6TYR 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 7CP7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
73 80Right-handed alpha
Helix 4
AA4
A
81 83Right-handed 310
Helix 5
AA5
A
115 129Right-handed alpha
Helix 6
AA6
A
172 180Right-handed alpha
Helix 7
AA7
A
199 205Right-handed alpha
Helix 8
AA8
A
208 213Right-handed 310
Helix 9
AA9
A
264 273Right-handed alpha
Helix 10
AB1
A
278 286Right-handed alpha
Helix 11
AB2
A
287 288Right-handed 310
Helix 12
AB3
A
289 291Right-handed 310
Helix 13
AB4
A
318 321Right-handed 310
Helix 14
AB5
A
330 350Right-handed alpha
Helix 15
AB6
A
353 385Right-handed alpha
Helix 16
AB7
A
387 394Right-handed alpha
Helix 17
AB8
A
404 408Right-handed alpha
Helix 18
AB9
A
410 427Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7CP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
40 44parallel
Strand 3
A
17 21parallel
Strand 4
A
163 166parallel
Strand 5
A
314 316parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
111 114anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 103first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
221 226parallel
Strand 4
A
229 236anti-parallel
Strand 5
A
241 249anti-parallel
Strand 6
A
190 198anti-parallel
Strand 7
A
293 297anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 145first strand
Strand 2
A
148 153anti-parallel
Strand 3
A
157 161anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il