Analysis of interatomic Contacts of Structural Units in PDB entry:
7CPM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CPM entry

There are 6 chains in PDB entry 7CPM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 14	ARG 257
B	PRO 15	ASP 258
C	PRO 15	ASP 258
D	PRO 15	ASP 258
E	GLU 14	ARG 256
F	GLU 14	ARG 256

There are 66 helices in PDB entry 7CPM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	56	79	Right-handed alpha
Helix 4	AA4	A	96	121	Right-handed alpha
Helix 5	AA5	A	135	150	Right-handed alpha
Helix 6	AA6	A	164	182	Right-handed alpha
Helix 7	AA7	A	191	197	Right-handed alpha
Helix 8	AA8	A	224	228	Right-handed 310
Helix 9	AA9	A	238	242	Right-handed 310
Helix 10	AB1	A	243	256	Right-handed alpha
Helix 11	AB2	B	31	35	Right-handed 310
Helix 12	AB3	B	45	53	Right-handed alpha
Helix 13	AB4	B	56	79	Right-handed alpha
Helix 14	AB5	B	91	95	Right-handed 310
Helix 15	AB6	B	96	121	Right-handed alpha
Helix 16	AB7	B	135	150	Right-handed alpha
Helix 17	AB8	B	164	182	Right-handed alpha
Helix 18	AB9	B	191	197	Right-handed alpha
Helix 19	AC1	B	224	228	Right-handed 310
Helix 20	AC2	B	238	242	Right-handed 310
Helix 21	AC3	B	243	257	Right-handed alpha
Helix 22	AC4	C	31	35	Right-handed 310
Helix 23	AC5	C	45	53	Right-handed alpha
Helix 24	AC6	C	56	79	Right-handed alpha
Helix 25	AC7	C	91	95	Right-handed 310
Helix 26	AC8	C	96	121	Right-handed alpha
Helix 27	AC9	C	135	150	Right-handed alpha
Helix 28	AD1	C	164	182	Right-handed alpha
Helix 29	AD2	C	191	197	Right-handed alpha
Helix 30	AD3	C	224	228	Right-handed 310
Helix 31	AD4	C	238	242	Right-handed 310
Helix 32	AD5	C	243	257	Right-handed alpha
Helix 33	AD6	D	31	35	Right-handed 310
Helix 34	AD7	D	45	53	Right-handed alpha
Helix 35	AD8	D	56	79	Right-handed alpha
Helix 36	AD9	D	96	122	Right-handed alpha
Helix 37	AE1	D	135	150	Right-handed alpha
Helix 38	AE2	D	164	182	Right-handed alpha
Helix 39	AE3	D	186	190	Right-handed 310
Helix 40	AE4	D	191	197	Right-handed alpha
Helix 41	AE5	D	224	228	Right-handed 310
Helix 42	AE6	D	238	242	Right-handed 310
Helix 43	AE7	D	243	257	Right-handed alpha
Helix 44	AE8	E	31	35	Right-handed 310
Helix 45	AE9	E	45	53	Right-handed alpha
Helix 46	AF1	E	56	79	Right-handed alpha
Helix 47	AF2	E	91	95	Right-handed 310
Helix 48	AF3	E	96	121	Right-handed alpha
Helix 49	AF4	E	135	150	Right-handed alpha
Helix 50	AF5	E	164	182	Right-handed alpha
Helix 51	AF6	E	186	190	Right-handed 310
Helix 52	AF7	E	191	197	Right-handed alpha
Helix 53	AF8	E	224	228	Right-handed 310
Helix 54	AF9	E	238	242	Right-handed 310
Helix 55	AG1	E	243	256	Right-handed alpha
Helix 56	AG2	F	31	35	Right-handed 310
Helix 57	AG3	F	45	53	Right-handed alpha
Helix 58	AG4	F	56	79	Right-handed alpha
Helix 59	AG5	F	91	95	Right-handed 310
Helix 60	AG6	F	96	122	Right-handed alpha
Helix 61	AG7	F	135	150	Right-handed alpha
Helix 62	AG8	F	164	182	Right-handed alpha
Helix 63	AG9	F	191	197	Right-handed alpha
Helix 64	AH1	F	224	228	Right-handed 310
Helix 65	AH2	F	238	242	Right-handed 310
Helix 66	AH3	F	243	256	Right-handed alpha

There are 6 sheets in PDB entry 7CPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	128	first strand
Strand 2	A	155	163	parallel
Strand 3	A	82	89	parallel
Strand 4	A	38	42	parallel
Strand 5	A	209	212	parallel
Strand 6	A	231	234	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	128	first strand
Strand 2	B	155	163	parallel
Strand 3	B	82	89	parallel
Strand 4	B	38	42	parallel
Strand 5	B	209	212	parallel
Strand 6	B	231	234	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	128	first strand
Strand 2	C	155	163	parallel
Strand 3	C	82	89	parallel
Strand 4	C	38	42	parallel
Strand 5	C	209	212	parallel
Strand 6	C	231	234	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	128	first strand
Strand 2	D	155	163	parallel
Strand 3	D	82	89	parallel
Strand 4	D	38	42	parallel
Strand 5	D	209	212	parallel
Strand 6	D	231	234	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	128	first strand
Strand 2	E	155	163	parallel
Strand 3	E	82	89	parallel
Strand 4	E	38	42	parallel
Strand 5	E	209	212	parallel
Strand 6	E	231	234	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	128	first strand
Strand 2	F	155	163	parallel
Strand 3	F	82	89	parallel
Strand 4	F	38	42	parallel
Strand 5	F	209	212	parallel
Strand 6	F	231	234	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CPM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CPM