Analysis of interatomic Contacts of Structural Units in PDB entry:
7CQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CQB entry

There is 1 chain in PDB entry 7CQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 30SER 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7CQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 45Right-handed alpha
Helix 2
AA2
A
90 95Right-handed 310
Helix 3
AA3
A
96 103Right-handed alpha
Helix 4
AA4
A
119 139Right-handed alpha
Helix 5
AA5
A
160 173Right-handed alpha
Helix 6
AA6
A
210 213Right-handed 310
Helix 7
AA7
A
214 222Right-handed alpha
Helix 8
AA8
A
246 263Right-handed alpha
Helix 9
AA9
A
265 267Right-handed 310
Helix 10
AB1
A
268 274Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7CQB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
107 112anti-parallel
Strand 4
A
78 84parallel
Strand 5
A
149 158parallel
Strand 6
A
178 179parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
227 232parallel
Strand 3
A
281 287anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il