Analysis of interatomic Contacts of Structural Units in PDB entry:
7CTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CTR entry

There are 2 chains in PDB entry 7CTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 46TYR 304
B
 PRO 46TYR 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 7CTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 62Right-handed alpha
Helix 2
AA2
A
108 112Right-handed 310
Helix 3
AA3
A
113 114Right-handed 310
Helix 4
AA4
A
115 122Right-handed alpha
Helix 5
AA5
A
138 156Right-handed alpha
Helix 6
AA6
A
158 163Right-handed alpha
Helix 7
AA7
A
176 189Right-handed alpha
Helix 8
AA8
A
230 238Right-handed alpha
Helix 9
AA9
A
255 259Right-handed 310
Helix 10
AB1
A
261 277Right-handed alpha
Helix 11
AB2
A
279 281Right-handed 310
Helix 12
AB3
A
282 287Right-handed alpha
Helix 13
AB4
B
56 62Right-handed alpha
Helix 14
AB5
B
108 112Right-handed 310
Helix 15
AB6
B
113 114Right-handed 310
Helix 16
AB7
B
115 122Right-handed alpha
Helix 17
AB8
B
138 156Right-handed alpha
Helix 18
AB9
B
158 163Right-handed alpha
Helix 19
AC1
B
176 189Right-handed alpha
Helix 20
AC2
B
230 238Right-handed alpha
Helix 21
AC3
B
255 259Right-handed 310
Helix 22
AC4
B
261 277Right-handed alpha
Helix 23
AC5
B
279 281Right-handed 310
Helix 24
AC6
B
282 287Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7CTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 78first strand
Strand 2
A
82 89anti-parallel
Strand 3
A
126 130anti-parallel
Strand 4
A
97 103parallel
Strand 5
A
165 175parallel
Strand 6
A
194 198parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
244 249parallel
Strand 3
A
295 300anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 78first strand
Strand 2
B
82 89anti-parallel
Strand 3
B
126 130anti-parallel
Strand 4
B
97 103parallel
Strand 5
B
165 175parallel
Strand 6
B
194 198parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 219first strand
Strand 2
B
244 249parallel
Strand 3
B
295 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il