Analysis of interatomic Contacts of Structural Units in PDB entry:
7CUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CUC entry

There are 2 chains in PDB entry 7CUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8GLN 310
B
 VAL 8GLN 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 7CUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 64Right-handed alpha
Helix 2
AA2
A
72 87Right-handed alpha
Helix 3
AA3
A
91 107Right-handed alpha
Helix 4
AA4
A
215 220Right-handed 310
Helix 5
AA5
A
223 227Right-handed 310
Helix 6
AA6
A
229 244Right-handed alpha
Helix 7
AA7
A
248 264Right-handed alpha
Helix 8
AA8
B
55 57Right-handed 310
Helix 9
AA9
B
58 64Right-handed alpha
Helix 10
AB1
B
72 87Right-handed alpha
Helix 11
AB2
B
91 107Right-handed alpha
Helix 12
AB3
B
215 220Right-handed 310
Helix 13
AB4
B
223 227Right-handed 310
Helix 14
AB5
B
229 244Right-handed alpha
Helix 15
AB6
B
248 264Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7CUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 21first strand
Strand 2
A
44 54anti-parallel
Strand 3
A
112 120anti-parallel
Strand 4
A
147 156anti-parallel
Strand 5
A
162 177anti-parallel
Strand 6
A
204 213anti-parallel
Strand 7
A
267 276anti-parallel
Strand 8
A
301 309anti-parallel
Strand 9
B
9 21anti-parallel
Strand 10
B
44 54anti-parallel
Strand 11
B
112 119anti-parallel
Strand 12
B
147 156anti-parallel
Strand 13
B
162 177anti-parallel
Strand 14
B
204 213anti-parallel
Strand 15
B
267 276anti-parallel
Strand 16
B
301 309anti-parallel
Strand 17
A
9 21anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
134 142anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 129first strand
Strand 2
B
132 142anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 283first strand
Strand 2
B
293 295anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il