Analysis of interatomic Contacts of Structural Units in PDB entry:
7CUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CUH entry

There are 2 chains in PDB entry 7CUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8VAL 337
B
 G 1 T 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7CUH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
29 34Right-handed alpha
Helix 3
AA3
A
147 151Right-handed 310
Helix 4
AA4
A
155 173Right-handed alpha
Helix 5
AA5
A
203 207Right-handed 310
Helix 6
AA6
A
269 276Right-handed alpha
Helix 7
AA7
A
323 325Right-handed 310
Helix 8
AA8
A
326 335Right-handed alpha
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There are 3 sheets in PDB entry 7CUH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
25 28anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
83 89anti-parallel
Strand 4
A
118 131parallel
Strand 5
A
104 115anti-parallel
Strand 6
A
41 52anti-parallel
Strand 7
A
65 72anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
284 294anti-parallel
Strand 3
A
300 304anti-parallel
Strand 4
A
263 267parallel
Strand 5
A
228 234anti-parallel
Strand 6
A
212 225anti-parallel
Strand 7
A
284 294anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il