Analysis of interatomic Contacts of Structural Units in PDB entry:
7CUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CUM entry

There are 2 chains in PDB entry 7CUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 165	GLY 864
B	SER 53	THR 749

There are 45 helices in PDB entry 7CUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	184	201	Right-handed alpha
Helix 2	AA2	A	221	234	Right-handed alpha
Helix 3	AA3	A	246	257	Right-handed alpha
Helix 4	AA4	A	271	275	Right-handed 310
Helix 5	AA5	A	292	303	Right-handed alpha
Helix 6	AA6	A	316	331	Right-handed alpha
Helix 7	AA7	A	347	358	Right-handed alpha
Helix 8	AA8	A	367	382	Right-handed alpha
Helix 9	AA9	A	442	454	Right-handed alpha
Helix 10	AB1	A	466	481	Right-handed alpha
Helix 11	AB2	A	503	515	Right-handed alpha
Helix 12	AB3	A	589	616	Right-handed alpha
Helix 13	AB4	A	629	643	Right-handed alpha
Helix 14	AB5	A	658	693	Right-handed alpha
Helix 15	AB6	A	707	731	Right-handed alpha
Helix 16	AB7	A	765	770	Right-handed alpha
Helix 17	AB8	A	770	791	Right-handed alpha
Helix 18	AB9	A	804	820	Right-handed alpha
Helix 19	AC1	A	821	826	Right-handed alpha
Helix 20	AC2	A	831	859	Right-handed alpha
Helix 21	AC3	B	70	77	Right-handed alpha
Helix 22	AC4	B	77	92	Right-handed alpha
Helix 23	AC5	B	109	123	Right-handed alpha
Helix 24	AC6	B	135	146	Right-handed alpha
Helix 25	AC7	B	147	149	Right-handed 310
Helix 26	AC8	B	160	165	Right-handed 310
Helix 27	AC9	B	179	181	Right-handed 310
Helix 28	AD1	B	182	194	Right-handed alpha
Helix 29	AD2	B	205	220	Right-handed alpha
Helix 30	AD3	B	236	247	Right-handed alpha
Helix 31	AD4	B	256	271	Right-handed alpha
Helix 32	AD5	B	288	292	Right-handed 310
Helix 33	AD6	B	303	311	Right-handed alpha
Helix 34	AD7	B	334	346	Right-handed alpha
Helix 35	AD8	B	354	377	Right-handed alpha
Helix 36	AD9	B	393	405	Right-handed alpha
Helix 37	AE1	B	478	506	Right-handed alpha
Helix 38	AE2	B	512	515	Right-handed 310
Helix 39	AE3	B	516	532	Right-handed alpha
Helix 40	AE4	B	532	537	Right-handed alpha
Helix 41	AE5	B	548	584	Right-handed alpha
Helix 42	AE6	B	598	619	Right-handed alpha
Helix 43	AE7	B	657	679	Right-handed alpha
Helix 44	AE8	B	689	713	Right-handed alpha
Helix 45	AE9	B	716	749	Right-handed alpha

There are 10 sheets in PDB entry 7CUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	217	first strand
Strand 2	A	168	176	parallel
Strand 3	A	239	243	parallel
Strand 4	A	263	266	parallel
Strand 5	A	283	285	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	340	first strand
Strand 2	A	308	311	parallel
Strand 3	A	362	363	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	393	first strand
Strand 2	A	423	427	parallel
Strand 3	A	537	542	anti-parallel
Strand 4	A	547	554	anti-parallel
Strand 5	A	559	562	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	520	first strand
Strand 2	A	523	526	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	584	first strand
Strand 2	A	753	762	parallel
Strand 3	A	735	740	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	104	first strand
Strand 2	B	55	61	parallel
Strand 3	B	127	132	parallel
Strand 4	B	153	155	parallel
Strand 5	B	172	174	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	B	197	202	parallel
Strand 3	B	250	254	parallel
Strand 4	B	278	282	parallel
Strand 5	B	315	319	parallel
Strand 6	B	425	432	anti-parallel
Strand 7	B	435	443	anti-parallel
Strand 8	B	448	450	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	410	first strand
Strand 2	B	413	418	anti-parallel
Strand 3	B	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	471	first strand
Strand 2	B	640	641	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	627	first strand
Strand 2	B	644	648	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CUM