Analysis of interatomic Contacts of Structural Units in PDB entry:
7CUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7CUP entry

There are 6 chains in PDB entry 7CUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	ALA 349
B	PRO 2	ALA 349
C	PRO 2	ALA 349
D	PRO 2	ALA 349
E	PRO 2	ARG 348
F	PRO 2	ARG 348

There are 85 helices in PDB entry 7CUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	19	Right-handed alpha
Helix 2	AA2	A	36	50	Right-handed alpha
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	84	93	Right-handed alpha
Helix 5	AA5	A	106	115	Right-handed alpha
Helix 6	AA6	A	125	132	Right-handed alpha
Helix 7	AA7	A	135	152	Right-handed alpha
Helix 8	AA8	A	242	254	Right-handed alpha
Helix 9	AA9	A	255	256	Right-handed 310
Helix 10	AB1	A	257	261	Right-handed 310
Helix 11	AB2	A	277	282	Right-handed 310
Helix 12	AB3	A	283	287	Right-handed 310
Helix 13	AB4	A	289	295	Right-handed alpha
Helix 14	AB5	A	306	310	Right-handed 310
Helix 15	AB6	A	344	348	Right-handed 310
Helix 16	AB7	B	4	19	Right-handed alpha
Helix 17	AB8	B	36	50	Right-handed alpha
Helix 18	AB9	B	71	75	Right-handed 310
Helix 19	AC1	B	84	93	Right-handed alpha
Helix 20	AC2	B	106	115	Right-handed alpha
Helix 21	AC3	B	125	132	Right-handed alpha
Helix 22	AC4	B	135	150	Right-handed alpha
Helix 23	AC5	B	241	255	Right-handed alpha
Helix 24	AC6	B	256	261	Right-handed 310
Helix 25	AC7	B	277	282	Right-handed 310
Helix 26	AC8	B	283	287	Right-handed 310
Helix 27	AC9	B	289	295	Right-handed alpha
Helix 28	AD1	B	306	310	Right-handed 310
Helix 29	AD2	B	344	348	Right-handed 310
Helix 30	AD3	C	4	19	Right-handed alpha
Helix 31	AD4	C	36	50	Right-handed alpha
Helix 32	AD5	C	71	75	Right-handed 310
Helix 33	AD6	C	84	93	Right-handed alpha
Helix 34	AD7	C	106	115	Right-handed alpha
Helix 35	AD8	C	125	132	Right-handed alpha
Helix 36	AD9	C	135	152	Right-handed alpha
Helix 37	AE1	C	242	255	Right-handed alpha
Helix 38	AE2	C	256	261	Right-handed 310
Helix 39	AE3	C	277	282	Right-handed 310
Helix 40	AE4	C	283	287	Right-handed 310
Helix 41	AE5	C	289	295	Right-handed alpha
Helix 42	AE6	C	306	310	Right-handed 310
Helix 43	AE7	C	344	348	Right-handed 310
Helix 44	AE8	D	4	19	Right-handed alpha
Helix 45	AE9	D	36	50	Right-handed alpha
Helix 46	AF1	D	71	75	Right-handed 310
Helix 47	AF2	D	84	93	Right-handed alpha
Helix 48	AF3	D	106	115	Right-handed alpha
Helix 49	AF4	D	125	132	Right-handed alpha
Helix 50	AF5	D	135	152	Right-handed alpha
Helix 51	AF6	D	242	255	Right-handed alpha
Helix 52	AF7	D	256	261	Right-handed 310
Helix 53	AF8	D	277	282	Right-handed 310
Helix 54	AF9	D	283	287	Right-handed 310
Helix 55	AG1	D	289	295	Right-handed alpha
Helix 56	AG2	D	306	310	Right-handed 310
Helix 57	AG3	D	344	348	Right-handed 310
Helix 58	AG4	E	4	19	Right-handed alpha
Helix 59	AG5	E	36	50	Right-handed alpha
Helix 60	AG6	E	71	75	Right-handed 310
Helix 61	AG7	E	84	93	Right-handed alpha
Helix 62	AG8	E	106	115	Right-handed alpha
Helix 63	AG9	E	125	132	Right-handed alpha
Helix 64	AH1	E	135	152	Right-handed alpha
Helix 65	AH2	E	242	254	Right-handed alpha
Helix 66	AH3	E	255	256	Right-handed 310
Helix 67	AH4	E	257	261	Right-handed 310
Helix 68	AH5	E	277	282	Right-handed 310
Helix 69	AH6	E	283	287	Right-handed 310
Helix 70	AH7	E	289	295	Right-handed alpha
Helix 71	AH8	E	306	310	Right-handed 310
Helix 72	AH9	E	344	348	Right-handed 310
Helix 73	AI1	F	4	19	Right-handed alpha
Helix 74	AI2	F	36	50	Right-handed alpha
Helix 75	AI3	F	84	93	Right-handed alpha
Helix 76	AI4	F	106	115	Right-handed alpha
Helix 77	AI5	F	125	132	Right-handed alpha
Helix 78	AI6	F	135	152	Right-handed alpha
Helix 79	AI7	F	242	255	Right-handed alpha
Helix 80	AI8	F	256	261	Right-handed 310
Helix 81	AI9	F	275	282	Right-handed 310
Helix 82	AJ1	F	283	287	Right-handed 310
Helix 83	AJ2	F	289	295	Right-handed alpha
Helix 84	AJ3	F	306	310	Right-handed 310
Helix 85	AJ4	F	344	348	Right-handed 310

There are 21 sheets in PDB entry 7CUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	189	first strand
Strand 2	A	118	121	parallel
Strand 3	A	96	99	parallel
Strand 4	A	26	31	parallel
Strand 5	A	53	58	parallel
Strand 6	E	53	58	anti-parallel
Strand 7	E	26	31	parallel
Strand 8	E	96	99	parallel
Strand 9	E	118	121	parallel
Strand 10	E	187	189	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	205	210	anti-parallel
Strand 4	A	164	168	anti-parallel
Strand 5	A	154	158	anti-parallel
Strand 6	A	327	330	anti-parallel
Strand 7	A	333	337	anti-parallel
Strand 8	A	340	341	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	194	197	anti-parallel
Strand 3	A	263	269	anti-parallel
Strand 4	A	299	303	anti-parallel
Strand 5	A	319	323	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	221	222	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	118	121	parallel
Strand 3	B	96	99	parallel
Strand 4	B	26	31	parallel
Strand 5	B	53	58	parallel
Strand 6	F	53	58	anti-parallel
Strand 7	F	26	31	parallel
Strand 8	F	96	99	parallel
Strand 9	F	118	121	parallel
Strand 10	F	187	189	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	227	232	anti-parallel
Strand 3	B	205	210	anti-parallel
Strand 4	B	164	168	anti-parallel
Strand 5	B	154	158	anti-parallel
Strand 6	B	327	330	anti-parallel
Strand 7	B	333	337	anti-parallel
Strand 8	B	340	341	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	194	197	anti-parallel
Strand 3	B	263	269	anti-parallel
Strand 4	B	299	303	anti-parallel
Strand 5	B	319	323	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	221	222	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	189	first strand
Strand 2	C	118	121	parallel
Strand 3	C	96	99	parallel
Strand 4	C	26	31	parallel
Strand 5	C	53	58	parallel
Strand 6	D	53	58	anti-parallel
Strand 7	D	26	31	parallel
Strand 8	D	96	99	parallel
Strand 9	D	118	121	parallel
Strand 10	D	187	189	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	241	first strand
Strand 2	C	227	232	anti-parallel
Strand 3	C	205	210	anti-parallel
Strand 4	C	164	168	anti-parallel
Strand 5	C	154	158	anti-parallel
Strand 6	C	327	330	anti-parallel
Strand 7	C	333	337	anti-parallel
Strand 8	C	340	341	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	194	197	anti-parallel
Strand 3	C	263	269	anti-parallel
Strand 4	C	299	303	anti-parallel
Strand 5	C	319	323	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	221	222	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	241	first strand
Strand 2	D	227	232	anti-parallel
Strand 3	D	205	210	anti-parallel
Strand 4	D	164	168	anti-parallel
Strand 5	D	154	158	anti-parallel
Strand 6	D	327	330	anti-parallel
Strand 7	D	333	337	anti-parallel
Strand 8	D	340	341	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	194	197	anti-parallel
Strand 3	D	263	269	anti-parallel
Strand 4	D	299	303	anti-parallel
Strand 5	D	319	323	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	216	first strand
Strand 2	D	221	222	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	241	first strand
Strand 2	E	227	232	anti-parallel
Strand 3	E	205	210	anti-parallel
Strand 4	E	164	168	anti-parallel
Strand 5	E	154	158	anti-parallel
Strand 6	E	327	330	anti-parallel
Strand 7	E	333	337	anti-parallel
Strand 8	E	340	341	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	194	197	anti-parallel
Strand 3	E	263	269	anti-parallel
Strand 4	E	299	303	anti-parallel
Strand 5	E	319	323	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	216	first strand
Strand 2	E	221	222	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	241	first strand
Strand 2	F	227	232	anti-parallel
Strand 3	F	205	210	anti-parallel
Strand 4	F	164	168	anti-parallel
Strand 5	F	154	158	anti-parallel
Strand 6	F	327	330	anti-parallel
Strand 7	F	333	337	anti-parallel
Strand 8	F	340	341	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	177	first strand
Strand 2	F	194	197	anti-parallel
Strand 3	F	263	269	anti-parallel
Strand 4	F	299	303	anti-parallel
Strand 5	F	319	323	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	215	216	first strand
Strand 2	F	221	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7CUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7CUP