Analysis of interatomic Contacts of Structural Units in PDB entry:
7CVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CVA entry

There are 2 chains in PDB entry 7CVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 413
B
 ALA 2VAL 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7CVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
27 34Right-handed alpha
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
84 107Right-handed alpha
Helix 5
AA5
A
108 114Right-handed alpha
Helix 6
AA6
A
139 145Right-handed alpha
Helix 7
AA7
A
148 151Right-handed 310
Helix 8
AA8
A
214 219Right-handed 310
Helix 9
AA9
A
252 257Right-handed alpha
Helix 10
AB1
A
259 264Right-handed alpha
Helix 11
AB2
A
278 288Right-handed alpha
Helix 12
AB3
A
288 294Right-handed alpha
Helix 13
AB4
A
359 363Right-handed 310
Helix 14
AB5
A
367 373Right-handed alpha
Helix 15
AB6
A
403 409Right-handed 310
Helix 16
AB7
B
4 14Right-handed alpha
Helix 17
AB8
B
27 33Right-handed alpha
Helix 18
AB9
B
34 36Right-handed 310
Helix 19
AC1
B
42 47Right-handed alpha
Helix 20
AC2
B
86 107Right-handed alpha
Helix 21
AC3
B
108 115Right-handed alpha
Helix 22
AC4
B
128 134Right-handed alpha
Helix 23
AC5
B
139 146Right-handed alpha
Helix 24
AC6
B
148 151Right-handed 310
Helix 25
AC7
B
214 219Right-handed 310
Helix 26
AC8
B
251 257Right-handed alpha
Helix 27
AC9
B
259 264Right-handed alpha
Helix 28
AD1
B
278 288Right-handed alpha
Helix 29
AD2
B
288 293Right-handed alpha
Helix 30
AD3
B
359 363Right-handed 310
Helix 31
AD4
B
367 373Right-handed alpha
Helix 32
AD5
B
403 409Right-handed 310
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There are 7 sheets in PDB entry 7CVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
23 26anti-parallel
Strand 3
A
352 356parallel
Strand 4
A
296 305parallel
Strand 5
A
324 332anti-parallel
Strand 6
A
269 275anti-parallel
Strand 7
A
229 232parallel
Strand 8
A
383 386parallel
Strand 9
A
395 399parallel
Strand 10
A
205 209parallel
Strand 11
A
182 184anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
411 412anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
153 156anti-parallel
Strand 3
A
190 194anti-parallel
Strand 4
A
197 201anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
352 356parallel
Strand 4
B
296 306parallel
Strand 5
B
324 332anti-parallel
Strand 6
B
269 275anti-parallel
Strand 7
B
229 232parallel
Strand 8
B
383 386parallel
Strand 9
B
395 399parallel
Strand 10
B
205 209parallel
Strand 11
B
182 184anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
352 356parallel
Strand 4
B
296 306parallel
Strand 5
B
312 315anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
411 413anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
153 157anti-parallel
Strand 3
B
190 194anti-parallel
Strand 4
B
197 201anti-parallel
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