Analysis of interatomic Contacts of Structural Units in PDB entry:
7CVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CVO entry

There are 6 chains in PDB entry 7CVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 77LYS 347
B
 ASP 23GLU 110
D
 G 1 C 25
E
 C 1 T 25
F
 GLN 78THR 319
G
 ASP 23GLU 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7CVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 90Right-handed alpha
Helix 2
AA2
A
99 127Right-handed alpha
Helix 3
AA3
A
133 144Right-handed alpha
Helix 4
AA4
A
145 151Right-handed 310
Helix 5
AA5
A
302 317Right-handed alpha
Helix 6
AA6
A
318 320Right-handed 310
Helix 7
AA7
A
328 336Right-handed alpha
Helix 8
AA8
B
27 38Right-handed alpha
Helix 9
AA9
B
46 75Right-handed alpha
Helix 10
AB1
B
81 93Right-handed alpha
Helix 11
AB2
B
94 109Right-handed alpha
Helix 12
AB3
F
80 90Right-handed alpha
Helix 13
AB4
F
99 127Right-handed alpha
Helix 14
AB5
F
133 144Right-handed alpha
Helix 15
AB6
F
145 151Right-handed 310
Helix 16
AB7
F
302 319Right-handed alpha
Helix 17
AB8
G
27 38Right-handed alpha
Helix 18
AB9
G
46 75Right-handed alpha
Helix 19
AC1
G
81 92Right-handed alpha
Helix 20
AC2
G
94 108Right-handed alpha
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There are 5 sheets in PDB entry 7CVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
B
79 80parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
B
44 45parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
344 345anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
96 97first strand
Strand 2
G
79 80parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
131 132first strand
Strand 2
G
44 45parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il