Analysis of interatomic Contacts of Structural Units in PDB entry:
7CVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CVP entry

There are 2 chains in PDB entry 7CVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7ASP 305
B
 ARG 7GLN 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7CVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 26Right-handed alpha
Helix 2
AA2
A
102 120Right-handed alpha
Helix 3
AA3
A
120 130Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
154 166Right-handed alpha
Helix 6
AA6
A
179 184Right-handed alpha
Helix 7
AA7
A
185 187Right-handed 310
Helix 8
AA8
A
192 197Right-handed alpha
Helix 9
AA9
A
198 200Right-handed 310
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
A
241 251Right-handed alpha
Helix 12
AB3
A
270 275Right-handed alpha
Helix 13
AB4
A
288 305Right-handed alpha
Helix 14
AB5
B
17 22Right-handed alpha
Helix 15
AB6
B
63 67Right-handed alpha
Helix 16
AB7
B
102 120Right-handed alpha
Helix 17
AB8
B
120 130Right-handed alpha
Helix 18
AB9
B
135 139Right-handed 310
Helix 19
AC1
B
154 166Right-handed alpha
Helix 20
AC2
B
179 186Right-handed alpha
Helix 21
AC3
B
192 197Right-handed alpha
Helix 22
AC4
B
198 200Right-handed 310
Helix 23
AC5
B
218 224Right-handed alpha
Helix 24
AC6
B
241 251Right-handed alpha
Helix 25
AC7
B
270 275Right-handed alpha
Helix 26
AC8
B
288 302Right-handed alpha
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There are 3 sheets in PDB entry 7CVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
50 53parallel
Strand 3
A
73 75parallel
Strand 4
A
95 97parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
170 174parallel
Strand 3
A
147 151parallel
Strand 4
A
202 205parallel
Strand 5
A
229 233parallel
Strand 6
A
254 259parallel
Strand 7
A
278 280parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
170 174parallel
Strand 3
B
147 151parallel
Strand 4
B
202 205parallel
Strand 5
B
230 233parallel
Strand 6
B
256 259parallel
Strand 7
B
278 280parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il