Analysis of interatomic Contacts of Structural Units in PDB entry:
7CWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CWD entry

There is 1 chain in PDB entry 7CWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 803
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7CWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed 310
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
174 181Right-handed alpha
Helix 5
AA5
A
305 309Right-handed 310
Helix 6
AA6
A
313 327Right-handed alpha
Helix 7
AA7
A
340 351Right-handed alpha
Helix 8
AA8
A
371 391Right-handed alpha
Helix 9
AA9
A
405 409Right-handed 310
Helix 10
AB1
A
410 426Right-handed alpha
Helix 11
AB2
A
451 461Right-handed alpha
Helix 12
AB3
A
469 473Right-handed 310
Helix 13
AB4
A
474 480Right-handed alpha
Helix 14
AB5
A
530 540Right-handed alpha
Helix 15
AB6
A
584 594Right-handed alpha
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There are 13 sheets in PDB entry 7CWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
113 116anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
10 14anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
128 136anti-parallel
Strand 5
A
94 98anti-parallel
Strand 6
A
101 106anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 171first strand
Strand 2
A
183 194anti-parallel
Strand 3
A
230 241anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 220first strand
Strand 2
A
200 209anti-parallel
Strand 3
A
224 226anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 220first strand
Strand 2
A
200 209anti-parallel
Strand 3
A
254 262anti-parallel
Strand 4
A
265 274anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
286 289anti-parallel
Strand 3
A
292 293anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 301first strand
Strand 2
A
331 334parallel
Strand 3
A
353 357parallel
Strand 4
A
396 403parallel
Strand 5
A
433 437parallel
Strand 6
A
463 467parallel
Strand 7
A
485 491parallel
Strand 8
A
544 550parallel
Strand 9
A
296 301parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
523 524parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 602first strand
Strand 2
A
612 619anti-parallel
Strand 3
A
659 664anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 637first strand
Strand 2
A
623 628anti-parallel
Strand 3
A
669 675anti-parallel
Strand 4
A
681 688anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 642first strand
Strand 2
A
648 651anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 700first strand
Strand 2
A
712 720anti-parallel
Strand 3
A
769 776anti-parallel
Strand 4
A
742 748anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 706first strand
Strand 2
A
795 802parallel
Strand 3
A
781 788anti-parallel
Strand 4
A
733 740anti-parallel
Strand 5
A
762 764anti-parallel
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