Analysis of interatomic Contacts of Structural Units in PDB entry:
7CYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7CYF entry

There are 6 chains in PDB entry 7CYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 374
B
 MET 1GLY 374
C
 MET 1GLY 374
D
 ALA 2CYS 110
E
 ALA 2CYS 110
F
 ALA 2CYS 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 7CYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 17Right-handed alpha
Helix 2
AA2
A
17 32Right-handed alpha
Helix 3
AA3
A
39 48Right-handed alpha
Helix 4
AA4
A
50 61Right-handed alpha
Helix 5
AA5
A
70 91Right-handed alpha
Helix 6
AA6
A
99 112Right-handed alpha
Helix 7
AA7
A
114 126Right-handed alpha
Helix 8
AA8
A
133 140Right-handed 310
Helix 9
AA9
A
144 164Right-handed alpha
Helix 10
AB1
A
211 216Right-handed alpha
Helix 11
AB2
A
224 236Right-handed alpha
Helix 12
AB3
A
239 244Right-handed alpha
Helix 13
AB4
A
248 250Right-handed 310
Helix 14
AB5
A
251 268Right-handed alpha
Helix 15
AB6
A
278 297Right-handed alpha
Helix 16
AB7
A
311 322Right-handed alpha
Helix 17
AB8
A
340 349Right-handed alpha
Helix 18
AB9
A
351 359Right-handed alpha
Helix 19
AC1
A
360 371Right-handed alpha
Helix 20
AC2
B
4 17Right-handed alpha
Helix 21
AC3
B
17 32Right-handed alpha
Helix 22
AC4
B
39 48Right-handed alpha
Helix 23
AC5
B
50 61Right-handed alpha
Helix 24
AC6
B
70 91Right-handed alpha
Helix 25
AC7
B
99 112Right-handed alpha
Helix 26
AC8
B
114 126Right-handed alpha
Helix 27
AC9
B
133 140Right-handed 310
Helix 28
AD1
B
144 164Right-handed alpha
Helix 29
AD2
B
211 216Right-handed alpha
Helix 30
AD3
B
224 236Right-handed alpha
Helix 31
AD4
B
239 244Right-handed alpha
Helix 32
AD5
B
248 250Right-handed 310
Helix 33
AD6
B
251 268Right-handed alpha
Helix 34
AD7
B
278 297Right-handed alpha
Helix 35
AD8
B
311 322Right-handed alpha
Helix 36
AD9
B
340 349Right-handed alpha
Helix 37
AE1
B
351 359Right-handed alpha
Helix 38
AE2
B
360 371Right-handed alpha
Helix 39
AE3
C
4 17Right-handed alpha
Helix 40
AE4
C
17 32Right-handed alpha
Helix 41
AE5
C
39 48Right-handed alpha
Helix 42
AE6
C
50 61Right-handed alpha
Helix 43
AE7
C
70 91Right-handed alpha
Helix 44
AE8
C
99 112Right-handed alpha
Helix 45
AE9
C
114 126Right-handed alpha
Helix 46
AF1
C
133 140Right-handed 310
Helix 47
AF2
C
144 164Right-handed alpha
Helix 48
AF3
C
211 216Right-handed alpha
Helix 49
AF4
C
224 236Right-handed alpha
Helix 50
AF5
C
239 244Right-handed alpha
Helix 51
AF6
C
248 250Right-handed 310
Helix 52
AF7
C
251 268Right-handed alpha
Helix 53
AF8
C
278 297Right-handed alpha
Helix 54
AF9
C
311 322Right-handed alpha
Helix 55
AG1
C
340 349Right-handed alpha
Helix 56
AG2
C
351 359Right-handed alpha
Helix 57
AG3
C
360 371Right-handed alpha
Helix 58
AG4
D
16 28Right-handed alpha
Helix 59
AG5
D
68 81Right-handed alpha
Helix 60
AG6
E
16 28Right-handed alpha
Helix 61
AG7
E
68 81Right-handed alpha
Helix 62
AG8
F
16 28Right-handed alpha
Helix 63
AG9
F
68 81Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7CYF.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 13first strand
Strand 2
D
32 40first strand
Strand 3
D
59 66anti-parallel
Strand 4
D
89 100anti-parallel
Strand 5
E
3 13first strand
Strand 6
E
32 40anti-parallel
Strand 7
E
59 66anti-parallel
Strand 8
E
89 100anti-parallel
Strand 9
F
3 13first strand
Strand 10
F
32 40anti-parallel
Strand 11
F
59 66anti-parallel
Strand 12
F
89 100anti-parallel
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