Analysis of interatomic Contacts of Structural Units in PDB entry:
7D08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D08 entry

There are 12 chains in PDB entry 7D08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 256
B	THR 10	ARG 272
C	VAL 1	VAL 95
D	MET 1	GLY 256
E	THR 10	ARG 272
F	VAL 1	VAL 95
G	SER 3	ILE 193
H	SER 3	ILE 193
I	SER 3	ILE 193
J	SER 3	ILE 193
K	SER 3	ILE 193
L	SER 3	ILE 193

There are 84 helices in PDB entry 7D08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	30	Right-handed alpha
Helix 2	AA2	A	36	49	Right-handed alpha
Helix 3	AA3	A	52	79	Right-handed alpha
Helix 4	AA4	A	83	88	Right-handed alpha
Helix 5	AA5	A	88	95	Right-handed alpha
Helix 6	AA6	A	95	106	Right-handed alpha
Helix 7	AA7	A	111	123	Right-handed alpha
Helix 8	AA8	A	124	133	Right-handed alpha
Helix 9	AA9	A	135	140	Right-handed alpha
Helix 10	AB1	A	140	150	Right-handed alpha
Helix 11	AB2	A	152	173	Right-handed alpha
Helix 12	AB3	A	178	185	Right-handed alpha
Helix 13	AB4	A	197	220	Right-handed alpha
Helix 14	AB5	A	231	255	Right-handed alpha
Helix 15	AB6	B	51	61	Right-handed alpha
Helix 16	AB7	B	81	89	Right-handed alpha
Helix 17	AB8	B	106	117	Right-handed alpha
Helix 18	AB9	B	122	137	Right-handed alpha
Helix 19	AC1	B	151	164	Right-handed alpha
Helix 20	AC2	B	181	200	Right-handed alpha
Helix 21	AC3	B	209	214	Right-handed alpha
Helix 22	AC4	B	234	239	Right-handed alpha
Helix 23	AC5	B	245	251	Right-handed alpha
Helix 24	AC6	C	20	32	Right-handed alpha
Helix 25	AC7	C	50	64	Right-handed alpha
Helix 26	AC8	C	77	86	Right-handed alpha
Helix 27	AC9	D	2	30	Right-handed alpha
Helix 28	AD1	D	36	49	Right-handed alpha
Helix 29	AD2	D	52	79	Right-handed alpha
Helix 30	AD3	D	83	88	Right-handed alpha
Helix 31	AD4	D	88	95	Right-handed alpha
Helix 32	AD5	D	95	106	Right-handed alpha
Helix 33	AD6	D	111	123	Right-handed alpha
Helix 34	AD7	D	124	133	Right-handed alpha
Helix 35	AD8	D	135	140	Right-handed alpha
Helix 36	AD9	D	140	150	Right-handed alpha
Helix 37	AE1	D	152	173	Right-handed alpha
Helix 38	AE2	D	178	188	Right-handed alpha
Helix 39	AE3	D	197	220	Right-handed alpha
Helix 40	AE4	D	231	254	Right-handed alpha
Helix 41	AE5	E	51	61	Right-handed alpha
Helix 42	AE6	E	81	89	Right-handed alpha
Helix 43	AE7	E	106	117	Right-handed alpha
Helix 44	AE8	E	122	137	Right-handed alpha
Helix 45	AE9	E	151	164	Right-handed alpha
Helix 46	AF1	E	181	200	Right-handed alpha
Helix 47	AF2	E	209	214	Right-handed alpha
Helix 48	AF3	E	234	239	Right-handed alpha
Helix 49	AF4	E	245	251	Right-handed alpha
Helix 50	AF5	F	20	32	Right-handed alpha
Helix 51	AF6	F	50	64	Right-handed alpha
Helix 52	AF7	F	77	86	Right-handed alpha
Helix 53	AF8	G	4	10	Right-handed alpha
Helix 54	AF9	G	10	26	Right-handed alpha
Helix 55	AG1	G	94	110	Right-handed alpha
Helix 56	AG2	G	119	123	Right-handed 310
Helix 57	AG3	G	124	135	Right-handed alpha
Helix 58	AG4	G	184	191	Right-handed alpha
Helix 59	AG5	H	4	28	Right-handed alpha
Helix 60	AG6	H	94	102	Right-handed alpha
Helix 61	AG7	H	103	110	Right-handed alpha
Helix 62	AG8	H	126	135	Right-handed alpha
Helix 63	AG9	H	184	193	Right-handed alpha
Helix 64	AH1	I	4	26	Right-handed alpha
Helix 65	AH2	I	94	110	Right-handed alpha
Helix 66	AH3	I	122	135	Right-handed alpha
Helix 67	AH4	I	184	193	Right-handed alpha
Helix 68	AH5	J	4	26	Right-handed alpha
Helix 69	AH6	J	96	108	Right-handed alpha
Helix 70	AH7	J	126	134	Right-handed alpha
Helix 71	AH8	J	184	193	Right-handed alpha
Helix 72	AH9	K	3	5	Right-handed 310
Helix 73	AI1	K	6	30	Right-handed alpha
Helix 74	AI2	K	94	99	Right-handed alpha
Helix 75	AI3	K	101	106	Right-handed alpha
Helix 76	AI4	K	114	118	Right-handed 310
Helix 77	AI5	K	123	131	Right-handed alpha
Helix 78	AI6	K	184	193	Right-handed alpha
Helix 79	AI7	L	6	29	Right-handed alpha
Helix 80	AI8	L	97	101	Right-handed 310
Helix 81	AI9	L	105	110	Right-handed alpha
Helix 82	AJ1	L	114	118	Right-handed 310
Helix 83	AJ2	L	122	132	Right-handed alpha
Helix 84	AJ3	L	184	192	Right-handed alpha

There are 17 sheets in PDB entry 7D08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	12	17	anti-parallel
Strand 3	B	69	72	anti-parallel
Strand 4	B	75	76	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	219	222	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	95	first strand
Strand 2	B	170	173	parallel
Strand 3	B	203	205	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	41	46	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	37	first strand
Strand 2	E	12	17	anti-parallel
Strand 3	E	69	72	anti-parallel
Strand 4	E	75	76	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	219	222	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	95	first strand
Strand 2	E	170	173	parallel
Strand 3	E	203	205	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	41	46	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	44	first strand
Strand 2	G	79	86	anti-parallel
Strand 3	G	64	74	anti-parallel
Strand 4	G	57	59	anti-parallel
Strand 5	G	158	162	parallel
Strand 6	G	145	149	anti-parallel
Strand 7	G	179	180	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	176	first strand
Strand 2	H	41	45	parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	63	73	anti-parallel
Strand 5	H	58	60	anti-parallel
Strand 6	H	159	162	parallel
Strand 7	H	145	148	anti-parallel
Strand 8	H	179	180	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	146	149	first strand
Strand 2	I	158	161	anti-parallel
Strand 3	I	57	59	parallel
Strand 4	I	64	74	anti-parallel
Strand 5	I	79	85	anti-parallel
Strand 6	I	41	45	anti-parallel
Strand 7	I	175	176	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	138	first strand
Strand 2	I	170	171	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	46	first strand
Strand 2	J	80	86	anti-parallel
Strand 3	J	70	73	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	64	67	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	162	first strand
Strand 2	J	145	150	anti-parallel
Strand 3	J	179	180	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	146	148	first strand
Strand 2	K	159	161	anti-parallel
Strand 3	K	57	59	parallel
Strand 4	K	64	73	anti-parallel
Strand 5	K	80	87	anti-parallel
Strand 6	K	39	46	anti-parallel
Strand 7	K	175	176	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	45	first strand
Strand 2	L	81	86	anti-parallel
Strand 3	L	64	72	anti-parallel
Strand 4	L	57	59	anti-parallel
Strand 5	L	158	161	parallel
Strand 6	L	146	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D08

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D08