Analysis of interatomic Contacts of Structural Units in PDB entry:
7D09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D09 entry

There are 12 chains in PDB entry 7D09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 256
B	THR 10	ARG 272
C	VAL 1	VAL 95
D	MET 1	GLY 256
E	THR 10	ARG 272
F	VAL 1	VAL 95
G	SER 3	ILE 193
H	SER 3	ILE 193
I	SER 3	ILE 193
J	SER 3	ILE 193
K	SER 3	ILE 193
L	SER 3	ILE 193

There are 93 helices in PDB entry 7D09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	30	Right-handed alpha
Helix 2	AA2	A	36	49	Right-handed alpha
Helix 3	AA3	A	52	76	Right-handed alpha
Helix 4	AA4	A	83	95	Right-handed alpha
Helix 5	AA5	A	95	104	Right-handed alpha
Helix 6	AA6	A	104	109	Right-handed alpha
Helix 7	AA7	A	109	123	Right-handed alpha
Helix 8	AA8	A	124	133	Right-handed alpha
Helix 9	AA9	A	135	140	Right-handed alpha
Helix 10	AB1	A	141	152	Right-handed alpha
Helix 11	AB2	A	152	172	Right-handed alpha
Helix 12	AB3	A	178	190	Right-handed alpha
Helix 13	AB4	A	197	220	Right-handed alpha
Helix 14	AB5	A	233	255	Right-handed alpha
Helix 15	AB6	B	51	60	Right-handed alpha
Helix 16	AB7	B	84	89	Right-handed alpha
Helix 17	AB8	B	90	92	Right-handed 310
Helix 18	AB9	B	106	112	Right-handed alpha
Helix 19	AC1	B	112	119	Right-handed alpha
Helix 20	AC2	B	122	138	Right-handed alpha
Helix 21	AC3	B	151	164	Right-handed alpha
Helix 22	AC4	B	181	200	Right-handed alpha
Helix 23	AC5	B	209	217	Right-handed alpha
Helix 24	AC6	B	235	240	Right-handed alpha
Helix 25	AC7	B	244	251	Right-handed alpha
Helix 26	AC8	C	21	32	Right-handed alpha
Helix 27	AC9	C	51	64	Right-handed alpha
Helix 28	AD1	C	78	86	Right-handed alpha
Helix 29	AD2	D	2	30	Right-handed alpha
Helix 30	AD3	D	36	49	Right-handed alpha
Helix 31	AD4	D	52	76	Right-handed alpha
Helix 32	AD5	D	83	95	Right-handed alpha
Helix 33	AD6	D	95	104	Right-handed alpha
Helix 34	AD7	D	104	109	Right-handed alpha
Helix 35	AD8	D	109	123	Right-handed alpha
Helix 36	AD9	D	124	133	Right-handed alpha
Helix 37	AE1	D	135	140	Right-handed alpha
Helix 38	AE2	D	141	152	Right-handed alpha
Helix 39	AE3	D	152	172	Right-handed alpha
Helix 40	AE4	D	178	190	Right-handed alpha
Helix 41	AE5	D	197	220	Right-handed alpha
Helix 42	AE6	D	233	255	Right-handed alpha
Helix 43	AE7	E	51	60	Right-handed alpha
Helix 44	AE8	E	84	89	Right-handed alpha
Helix 45	AE9	E	90	92	Right-handed 310
Helix 46	AF1	E	106	112	Right-handed alpha
Helix 47	AF2	E	112	119	Right-handed alpha
Helix 48	AF3	E	122	138	Right-handed alpha
Helix 49	AF4	E	151	164	Right-handed alpha
Helix 50	AF5	E	181	200	Right-handed alpha
Helix 51	AF6	E	209	217	Right-handed alpha
Helix 52	AF7	E	235	240	Right-handed alpha
Helix 53	AF8	E	244	251	Right-handed alpha
Helix 54	AF9	F	21	32	Right-handed alpha
Helix 55	AG1	F	51	63	Right-handed alpha
Helix 56	AG2	F	78	86	Right-handed alpha
Helix 57	AG3	G	4	26	Right-handed alpha
Helix 58	AG4	G	96	101	Right-handed alpha
Helix 59	AG5	G	101	109	Right-handed alpha
Helix 60	AG6	G	123	133	Right-handed alpha
Helix 61	AG7	G	184	193	Right-handed alpha
Helix 62	AG8	H	4	20	Right-handed alpha
Helix 63	AG9	H	24	30	Right-handed alpha
Helix 64	AH1	H	89	91	Right-handed 310
Helix 65	AH2	H	94	110	Right-handed alpha
Helix 66	AH3	H	112	116	Right-handed 310
Helix 67	AH4	H	124	132	Right-handed alpha
Helix 68	AH5	H	184	193	Right-handed alpha
Helix 69	AH6	I	5	28	Right-handed alpha
Helix 70	AH7	I	94	101	Right-handed alpha
Helix 71	AH8	I	102	108	Right-handed alpha
Helix 72	AH9	I	115	119	Right-handed 310
Helix 73	AI1	I	124	132	Right-handed alpha
Helix 74	AI2	I	184	192	Right-handed alpha
Helix 75	AI3	J	4	9	Right-handed alpha
Helix 76	AI4	J	10	28	Right-handed alpha
Helix 77	AI5	J	95	100	Right-handed 310
Helix 78	AI6	J	101	106	Right-handed alpha
Helix 79	AI7	J	111	116	Right-handed alpha
Helix 80	AI8	J	123	132	Right-handed alpha
Helix 81	AI9	J	184	189	Right-handed alpha
Helix 82	AJ1	K	4	23	Right-handed alpha
Helix 83	AJ2	K	97	106	Right-handed alpha
Helix 84	AJ3	K	126	134	Right-handed alpha
Helix 85	AJ4	K	184	193	Right-handed alpha
Helix 86	AJ5	L	3	8	Right-handed 310
Helix 87	AJ6	L	9	28	Right-handed alpha
Helix 88	AJ7	L	87	92	Right-handed alpha
Helix 89	AJ8	L	94	102	Right-handed alpha
Helix 90	AJ9	L	102	110	Right-handed alpha
Helix 91	AK1	L	118	122	Right-handed 310
Helix 92	AK2	L	123	135	Right-handed alpha
Helix 93	AK3	L	184	192	Right-handed alpha

There are 17 sheets in PDB entry 7D09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	12	17	anti-parallel
Strand 3	B	69	72	anti-parallel
Strand 4	B	75	76	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	27	28	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	171	174	parallel
Strand 3	B	203	206	parallel
Strand 4	B	42	45	parallel
Strand 5	B	219	223	parallel
Strand 6	B	228	230	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	10	13	anti-parallel
Strand 3	C	45	46	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	71	72	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	37	first strand
Strand 2	E	12	17	anti-parallel
Strand 3	E	69	72	anti-parallel
Strand 4	E	75	76	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	22	first strand
Strand 2	E	27	28	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	171	174	parallel
Strand 3	E	203	206	parallel
Strand 4	E	42	45	parallel
Strand 5	E	219	223	parallel
Strand 6	E	228	230	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	45	46	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	68	73	first strand
Strand 2	G	80	85	anti-parallel
Strand 3	G	41	45	anti-parallel
Strand 4	G	175	176	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	58	59	anti-parallel
Strand 3	G	157	162	parallel
Strand 4	G	145	150	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	44	first strand
Strand 2	H	82	87	anti-parallel
Strand 3	H	64	71	anti-parallel
Strand 4	H	57	59	anti-parallel
Strand 5	H	157	162	parallel
Strand 6	H	145	150	anti-parallel
Strand 7	H	179	180	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	46	first strand
Strand 2	I	80	85	anti-parallel
Strand 3	I	64	73	anti-parallel
Strand 4	I	57	59	anti-parallel
Strand 5	I	158	162	parallel
Strand 6	I	145	149	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	44	first strand
Strand 2	J	80	84	anti-parallel
Strand 3	J	70	73	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	59	first strand
Strand 2	J	157	162	parallel
Strand 3	J	145	150	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	44	first strand
Strand 2	K	80	86	anti-parallel
Strand 3	K	64	73	anti-parallel
Strand 4	K	58	59	anti-parallel
Strand 5	K	158	162	parallel
Strand 6	K	145	149	anti-parallel
Strand 7	K	179	180	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	44	first strand
Strand 2	L	79	85	anti-parallel
Strand 3	L	64	74	anti-parallel
Strand 4	L	58	59	anti-parallel
Strand 5	L	158	162	parallel
Strand 6	L	145	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D09

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D09