Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D0I entry

There are 6 chains in PDB entry 7D0I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TRP 177	GLN 656
D	TRP 177	GLN 656
F	TRP 177	GLN 656
H	TRP 177	GLN 656
J	TRP 177	GLN 656
L	TRP 177	GLN 656

There are150 helices in PDB entry 7D0I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	182	196	Right-handed alpha
Helix 2	AA2	B	197	224	Right-handed alpha
Helix 3	AA3	B	253	288	Right-handed alpha
Helix 4	AA4	B	301	313	Right-handed alpha
Helix 5	AA5	B	335	344	Right-handed alpha
Helix 6	AA6	B	344	356	Right-handed alpha
Helix 7	AA7	B	372	383	Right-handed alpha
Helix 8	AA8	B	383	388	Right-handed alpha
Helix 9	AA9	B	395	399	Right-handed 310
Helix 10	AB1	B	400	402	Right-handed 310
Helix 11	AB2	B	403	411	Right-handed alpha
Helix 12	AB3	B	411	426	Right-handed alpha
Helix 13	AB4	B	426	448	Right-handed alpha
Helix 14	AB5	B	449	453	Right-handed 310
Helix 15	AB6	B	460	465	Right-handed alpha
Helix 16	AB7	B	471	481	Right-handed alpha
Helix 17	AB8	B	482	490	Right-handed alpha
Helix 18	AB9	B	495	521	Right-handed alpha
Helix 19	AC1	B	538	556	Right-handed alpha
Helix 20	AC2	B	564	577	Right-handed alpha
Helix 21	AC3	B	580	584	Right-handed 310
Helix 22	AC4	B	590	599	Right-handed alpha
Helix 23	AC5	B	603	624	Right-handed alpha
Helix 24	AC6	B	625	627	Right-handed 310
Helix 25	AC7	B	628	639	Right-handed alpha
Helix 26	AC8	D	182	196	Right-handed alpha
Helix 27	AC9	D	197	224	Right-handed alpha
Helix 28	AD1	D	253	288	Right-handed alpha
Helix 29	AD2	D	301	313	Right-handed alpha
Helix 30	AD3	D	335	344	Right-handed alpha
Helix 31	AD4	D	344	356	Right-handed alpha
Helix 32	AD5	D	372	383	Right-handed alpha
Helix 33	AD6	D	383	388	Right-handed alpha
Helix 34	AD7	D	395	399	Right-handed 310
Helix 35	AD8	D	400	402	Right-handed 310
Helix 36	AD9	D	403	411	Right-handed alpha
Helix 37	AE1	D	411	426	Right-handed alpha
Helix 38	AE2	D	426	448	Right-handed alpha
Helix 39	AE3	D	449	453	Right-handed 310
Helix 40	AE4	D	460	465	Right-handed alpha
Helix 41	AE5	D	471	481	Right-handed alpha
Helix 42	AE6	D	482	490	Right-handed alpha
Helix 43	AE7	D	495	521	Right-handed alpha
Helix 44	AE8	D	538	556	Right-handed alpha
Helix 45	AE9	D	564	577	Right-handed alpha
Helix 46	AF1	D	580	584	Right-handed 310
Helix 47	AF2	D	590	599	Right-handed alpha
Helix 48	AF3	D	603	624	Right-handed alpha
Helix 49	AF4	D	625	627	Right-handed 310
Helix 50	AF5	D	628	639	Right-handed alpha
Helix 51	AF6	F	182	196	Right-handed alpha
Helix 52	AF7	F	197	224	Right-handed alpha
Helix 53	AF8	F	253	288	Right-handed alpha
Helix 54	AF9	F	301	313	Right-handed alpha
Helix 55	AG1	F	335	344	Right-handed alpha
Helix 56	AG2	F	344	356	Right-handed alpha
Helix 57	AG3	F	372	383	Right-handed alpha
Helix 58	AG4	F	383	388	Right-handed alpha
Helix 59	AG5	F	395	399	Right-handed 310
Helix 60	AG6	F	400	402	Right-handed 310
Helix 61	AG7	F	403	411	Right-handed alpha
Helix 62	AG8	F	411	426	Right-handed alpha
Helix 63	AG9	F	426	448	Right-handed alpha
Helix 64	AH1	F	449	453	Right-handed 310
Helix 65	AH2	F	460	465	Right-handed alpha
Helix 66	AH3	F	471	481	Right-handed alpha
Helix 67	AH4	F	482	490	Right-handed alpha
Helix 68	AH5	F	495	521	Right-handed alpha
Helix 69	AH6	F	538	556	Right-handed alpha
Helix 70	AH7	F	564	577	Right-handed alpha
Helix 71	AH8	F	580	584	Right-handed 310
Helix 72	AH9	F	590	599	Right-handed alpha
Helix 73	AI1	F	603	624	Right-handed alpha
Helix 74	AI2	F	625	627	Right-handed 310
Helix 75	AI3	F	628	639	Right-handed alpha
Helix 76	AI4	H	182	196	Right-handed alpha
Helix 77	AI5	H	197	224	Right-handed alpha
Helix 78	AI6	H	253	288	Right-handed alpha
Helix 79	AI7	H	301	313	Right-handed alpha
Helix 80	AI8	H	335	344	Right-handed alpha
Helix 81	AI9	H	344	356	Right-handed alpha
Helix 82	AJ1	H	372	383	Right-handed alpha
Helix 83	AJ2	H	383	388	Right-handed alpha
Helix 84	AJ3	H	395	399	Right-handed 310
Helix 85	AJ4	H	400	402	Right-handed 310
Helix 86	AJ5	H	403	411	Right-handed alpha
Helix 87	AJ6	H	411	426	Right-handed alpha
Helix 88	AJ7	H	426	448	Right-handed alpha
Helix 89	AJ8	H	449	453	Right-handed 310
Helix 90	AJ9	H	460	465	Right-handed alpha
Helix 91	AK1	H	471	481	Right-handed alpha
Helix 92	AK2	H	482	490	Right-handed alpha
Helix 93	AK3	H	495	521	Right-handed alpha
Helix 94	AK4	H	538	556	Right-handed alpha
Helix 95	AK5	H	564	577	Right-handed alpha
Helix 96	AK6	H	580	584	Right-handed 310
Helix 97	AK7	H	590	599	Right-handed alpha
Helix 98	AK8	H	603	624	Right-handed alpha
Helix 99	AK9	H	625	627	Right-handed 310
Helix 100	AL1	H	628	639	Right-handed alpha
Helix 101	AL2	J	182	196	Right-handed alpha
Helix 102	AL3	J	197	224	Right-handed alpha
Helix 103	AL4	J	253	288	Right-handed alpha
Helix 104	AL5	J	301	313	Right-handed alpha
Helix 105	AL6	J	335	344	Right-handed alpha
Helix 106	AL7	J	344	356	Right-handed alpha
Helix 107	AL8	J	372	383	Right-handed alpha
Helix 108	AL9	J	383	388	Right-handed alpha
Helix 109	AM1	J	395	399	Right-handed 310
Helix 110	AM2	J	400	402	Right-handed 310
Helix 111	AM3	J	403	411	Right-handed alpha
Helix 112	AM4	J	411	426	Right-handed alpha
Helix 113	AM5	J	426	448	Right-handed alpha
Helix 114	AM6	J	449	453	Right-handed 310
Helix 115	AM7	J	460	465	Right-handed alpha
Helix 116	AM8	J	471	481	Right-handed alpha
Helix 117	AM9	J	482	490	Right-handed alpha
Helix 118	AN1	J	495	521	Right-handed alpha
Helix 119	AN2	J	538	556	Right-handed alpha
Helix 120	AN3	J	564	577	Right-handed alpha
Helix 121	AN4	J	580	584	Right-handed 310
Helix 122	AN5	J	590	599	Right-handed alpha
Helix 123	AN6	J	603	624	Right-handed alpha
Helix 124	AN7	J	625	627	Right-handed 310
Helix 125	AN8	J	628	639	Right-handed alpha
Helix 126	AN9	L	182	196	Right-handed alpha
Helix 127	AO1	L	197	224	Right-handed alpha
Helix 128	AO2	L	253	288	Right-handed alpha
Helix 129	AO3	L	301	313	Right-handed alpha
Helix 130	AO4	L	335	344	Right-handed alpha
Helix 131	AO5	L	344	356	Right-handed alpha
Helix 132	AO6	L	372	383	Right-handed alpha
Helix 133	AO7	L	383	388	Right-handed alpha
Helix 134	AO8	L	395	399	Right-handed 310
Helix 135	AO9	L	400	402	Right-handed 310
Helix 136	AP1	L	403	411	Right-handed alpha
Helix 137	AP2	L	411	426	Right-handed alpha
Helix 138	AP3	L	426	448	Right-handed alpha
Helix 139	AP4	L	449	453	Right-handed 310
Helix 140	AP5	L	460	465	Right-handed alpha
Helix 141	AP6	L	471	481	Right-handed alpha
Helix 142	AP7	L	482	490	Right-handed alpha
Helix 143	AP8	L	495	521	Right-handed alpha
Helix 144	AP9	L	538	556	Right-handed alpha
Helix 145	AQ1	L	564	577	Right-handed alpha
Helix 146	AQ2	L	580	584	Right-handed 310
Helix 147	AQ3	L	590	599	Right-handed alpha
Helix 148	AQ4	L	603	624	Right-handed alpha
Helix 149	AQ5	L	625	627	Right-handed 310
Helix 150	AQ6	L	628	639	Right-handed alpha

There are 12 sheets in PDB entry 7D0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	600	602	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	640	643	first strand
Strand 2	B	647	650	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	457	first strand
Strand 2	D	600	602	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	640	643	first strand
Strand 2	D	647	650	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	600	602	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	640	643	first strand
Strand 2	F	647	650	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	455	457	first strand
Strand 2	H	600	602	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	640	643	first strand
Strand 2	H	647	650	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	455	457	first strand
Strand 2	J	600	602	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	640	643	first strand
Strand 2	J	647	650	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	455	457	first strand
Strand 2	L	600	602	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	640	643	first strand
Strand 2	L	647	650	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D0I

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0I