Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D0J entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 30 chains in PDB entry 7D0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	GLY 751
B	ALA 2	GLY 735
C	ALA 2	TYR 81
D	TRP 53	ILE 196
E	GLU 34	ALA 96
F	ASP 63	ARG 227
G	LEU 32	GLY 122
H	LYS 31	LEU 130
I	PRO 68	PRO 104
J	MET 1	PHE 41
K	PHE 29	LEU 113
L	LYS 38	SER 196
O	ALA 31	GLN 123
P	ILE 30	SER 248
Q	ILE 30	SER 248
R	ILE 30	SER 248
S	LYS 21	LYS 22
S	ALA 24	SER 253
T	ILE 30	SER 248
U	ILE 30	SER 248
1	LYS 35	PHE 228
2	ARG 28	ASN 228
3	LEU 61	ALA 263
4	LEU 58	ALA 262
5	ARG 32	SER 256
6	SER 28	PRO 257
7	VAL 29	ILE 240
8	ARG 27	LEU 243
9	PRO 29	LEU 210
a	LYS 35	PHE 228

There are210 helices in PDB entry 7D0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	31	Right-handed 310
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	46	55	Right-handed alpha
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	65	98	Right-handed alpha
Helix 6	AA6	A	100	107	Right-handed alpha
Helix 7	AA7	A	123	128	Right-handed 310
Helix 8	AA8	A	143	152	Right-handed alpha
Helix 9	AA9	A	155	183	Right-handed alpha
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	193	220	Right-handed alpha
Helix 12	AB3	A	220	231	Right-handed alpha
Helix 13	AB4	A	239	246	Right-handed alpha
Helix 14	AB5	A	246	254	Right-handed alpha
Helix 15	AB6	A	255	260	Right-handed 310
Helix 16	AB7	A	261	266	Right-handed alpha
Helix 17	AB8	A	268	273	Right-handed 310
Helix 18	AB9	A	290	309	Right-handed alpha
Helix 19	AC1	A	321	329	Right-handed alpha
Helix 20	AC2	A	340	348	Right-handed alpha
Helix 21	AC3	A	348	374	Right-handed alpha
Helix 22	AC4	A	383	415	Right-handed alpha
Helix 23	AC5	A	418	422	Right-handed 310
Helix 24	AC6	A	425	433	Right-handed alpha
Helix 25	AC7	A	433	465	Right-handed alpha
Helix 26	AC8	A	467	471	Right-handed 310
Helix 27	AC9	A	481	494	Right-handed alpha
Helix 28	AD1	A	495	497	Right-handed 310
Helix 29	AD2	A	529	556	Right-handed alpha
Helix 30	AD3	A	587	618	Right-handed alpha
Helix 31	AD4	A	634	639	Right-handed alpha
Helix 32	AD5	A	641	649	Right-handed alpha
Helix 33	AD6	A	654	659	Right-handed alpha
Helix 34	AD7	A	665	688	Right-handed alpha
Helix 35	AD8	A	689	707	Right-handed alpha
Helix 36	AD9	A	719	751	Right-handed alpha
Helix 37	AE1	B	19	28	Right-handed alpha
Helix 38	AE2	B	31	35	Right-handed 310
Helix 39	AE3	B	40	73	Right-handed alpha
Helix 40	AE4	B	74	79	Right-handed alpha
Helix 41	AE5	B	98	106	Right-handed alpha
Helix 42	AE6	B	120	129	Right-handed alpha
Helix 43	AE7	B	132	157	Right-handed alpha
Helix 44	AE8	B	165	169	Right-handed 310
Helix 45	AE9	B	171	198	Right-handed alpha
Helix 46	AF1	B	198	205	Right-handed alpha
Helix 47	AF2	B	224	229	Right-handed alpha
Helix 48	AF3	B	230	235	Right-handed 310
Helix 49	AF4	B	270	289	Right-handed alpha
Helix 50	AF5	B	301	309	Right-handed alpha
Helix 51	AF6	B	311	315	Right-handed 310
Helix 52	AF7	B	323	328	Right-handed alpha
Helix 53	AF8	B	330	356	Right-handed alpha
Helix 54	AF9	B	365	398	Right-handed alpha
Helix 55	AG1	B	401	405	Right-handed 310
Helix 56	AG2	B	407	415	Right-handed alpha
Helix 57	AG3	B	415	447	Right-handed alpha
Helix 58	AG4	B	458	469	Right-handed alpha
Helix 59	AG5	B	484	491	Right-handed alpha
Helix 60	AG6	B	495	503	Right-handed alpha
Helix 61	AG7	B	514	541	Right-handed alpha
Helix 62	AG8	B	550	554	Right-handed 310
Helix 63	AG9	B	572	605	Right-handed alpha
Helix 64	AH1	B	606	614	Right-handed alpha
Helix 65	AH2	B	616	624	Right-handed alpha
Helix 66	AH3	B	629	634	Right-handed alpha
Helix 67	AH4	B	644	667	Right-handed alpha
Helix 68	AH5	B	669	686	Right-handed alpha
Helix 69	AH6	B	702	734	Right-handed alpha
Helix 70	AH7	C	15	21	Right-handed alpha
Helix 71	AH8	C	52	58	Right-handed alpha
Helix 72	AH9	D	76	81	Right-handed alpha
Helix 73	AI1	D	117	131	Right-handed alpha
Helix 74	AI2	F	73	92	Right-handed alpha
Helix 75	AI3	F	98	121	Right-handed alpha
Helix 76	AI4	F	136	143	Right-handed alpha
Helix 77	AI5	F	149	176	Right-handed alpha
Helix 78	AI6	F	181	186	Right-handed alpha
Helix 79	AI7	F	188	198	Right-handed alpha
Helix 80	AI8	F	201	212	Right-handed alpha
Helix 81	AI9	G	33	52	Right-handed alpha
Helix 82	AJ1	G	54	59	Right-handed alpha
Helix 83	AJ2	G	96	120	Right-handed alpha
Helix 84	AJ3	H	43	48	Right-handed alpha
Helix 85	AJ4	H	64	72	Right-handed alpha
Helix 86	AJ5	H	79	102	Right-handed alpha
Helix 87	AJ6	I	74	100	Right-handed alpha
Helix 88	AJ7	J	2	9	Right-handed alpha
Helix 89	AJ8	J	10	33	Right-handed alpha
Helix 90	AJ9	K	32	51	Right-handed alpha
Helix 91	AK1	K	86	111	Right-handed alpha
Helix 92	AK2	L	62	71	Right-handed alpha
Helix 93	AK3	L	72	76	Right-handed 310
Helix 94	AK4	L	80	104	Right-handed alpha
Helix 95	AK5	L	112	139	Right-handed alpha
Helix 96	AK6	L	159	162	Right-handed 310
Helix 97	AK7	L	163	191	Right-handed alpha
Helix 98	AK8	O	47	57	Right-handed alpha
Helix 99	AK9	O	75	85	Right-handed alpha
Helix 100	AL1	O	96	115	Right-handed alpha
Helix 101	AL2	O	116	118	Right-handed 310
Helix 102	AL3	P	41	45	Right-handed 310
Helix 103	AL4	P	71	106	Right-handed alpha
Helix 104	AL5	P	128	132	Right-handed 310
Helix 105	AL6	P	140	162	Right-handed alpha
Helix 106	AL7	P	186	218	Right-handed alpha
Helix 107	AL8	P	221	232	Right-handed alpha
Helix 108	AL9	P	238	243	Right-handed 310
Helix 109	AM1	Q	41	45	Right-handed 310
Helix 110	AM2	Q	71	106	Right-handed alpha
Helix 111	AM3	Q	128	132	Right-handed 310
Helix 112	AM4	Q	140	162	Right-handed alpha
Helix 113	AM5	Q	186	218	Right-handed alpha
Helix 114	AM6	Q	221	232	Right-handed alpha
Helix 115	AM7	Q	239	243	Right-handed 310
Helix 116	AM8	R	41	45	Right-handed 310
Helix 117	AM9	R	71	106	Right-handed alpha
Helix 118	AN1	R	128	132	Right-handed 310
Helix 119	AN2	R	140	162	Right-handed alpha
Helix 120	AN3	R	186	218	Right-handed alpha
Helix 121	AN4	R	221	232	Right-handed alpha
Helix 122	AN5	R	239	243	Right-handed 310
Helix 123	AN6	S	76	111	Right-handed alpha
Helix 124	AN7	S	123	128	Right-handed 310
Helix 125	AN8	S	133	137	Right-handed 310
Helix 126	AN9	S	145	167	Right-handed alpha
Helix 127	AO1	S	191	223	Right-handed alpha
Helix 128	AO2	S	226	237	Right-handed alpha
Helix 129	AO3	S	242	247	Right-handed 310
Helix 130	AO4	T	41	45	Right-handed 310
Helix 131	AO5	T	71	106	Right-handed alpha
Helix 132	AO6	T	128	132	Right-handed 310
Helix 133	AO7	T	140	162	Right-handed alpha
Helix 134	AO8	T	186	218	Right-handed alpha
Helix 135	AO9	T	221	232	Right-handed alpha
Helix 136	AP1	T	239	243	Right-handed 310
Helix 137	AP2	U	41	45	Right-handed 310
Helix 138	AP3	U	71	106	Right-handed alpha
Helix 139	AP4	U	128	132	Right-handed 310
Helix 140	AP5	U	140	162	Right-handed alpha
Helix 141	AP6	U	186	218	Right-handed alpha
Helix 142	AP7	U	221	232	Right-handed alpha
Helix 143	AP8	U	239	243	Right-handed 310
Helix 144	AP9	1	67	98	Right-handed alpha
Helix 145	AQ1	1	107	112	Right-handed alpha
Helix 146	AQ2	1	126	146	Right-handed alpha
Helix 147	AQ3	1	169	198	Right-handed alpha
Helix 148	AQ4	1	201	212	Right-handed alpha
Helix 149	AQ5	2	62	90	Right-handed alpha
Helix 150	AQ6	2	94	98	Right-handed 310
Helix 151	AQ7	2	108	132	Right-handed alpha
Helix 152	AQ8	2	153	173	Right-handed alpha
Helix 153	AQ9	2	181	191	Right-handed alpha
Helix 154	AR1	2	197	201	Right-handed 310
Helix 155	AR2	2	204	216	Right-handed alpha
Helix 156	AR3	2	217	227	Right-handed alpha
Helix 157	AR4	3	83	114	Right-handed alpha
Helix 158	AR5	3	124	128	Right-handed 310
Helix 159	AR6	3	143	168	Right-handed alpha
Helix 160	AR7	3	194	199	Right-handed alpha
Helix 161	AR8	3	209	238	Right-handed alpha
Helix 162	AR9	3	241	252	Right-handed alpha
Helix 163	AS1	3	259	263	Right-handed 310
Helix 164	AS2	4	89	120	Right-handed alpha
Helix 165	AS3	4	145	170	Right-handed alpha
Helix 166	AS4	4	195	199	Right-handed 310
Helix 167	AS5	4	207	236	Right-handed alpha
Helix 168	AS6	4	239	250	Right-handed alpha
Helix 169	AS7	4	255	260	Right-handed alpha
Helix 170	AS8	5	63	95	Right-handed alpha
Helix 171	AS9	5	99	103	Right-handed 310
Helix 172	AT1	5	117	142	Right-handed alpha
Helix 173	AT2	5	166	170	Right-handed 310
Helix 174	AT3	5	179	207	Right-handed alpha
Helix 175	AT4	5	210	221	Right-handed alpha
Helix 176	AT5	5	226	231	Right-handed alpha
Helix 177	AT6	6	60	92	Right-handed alpha
Helix 178	AT7	6	96	100	Right-handed 310
Helix 179	AT8	6	109	134	Right-handed alpha
Helix 180	AT9	6	158	162	Right-handed 310
Helix 181	AU1	6	168	197	Right-handed alpha
Helix 182	AU2	6	200	211	Right-handed alpha
Helix 183	AU3	6	252	256	Right-handed 310
Helix 184	AU4	7	61	95	Right-handed alpha
Helix 185	AU5	7	104	113	Right-handed alpha
Helix 186	AU6	7	116	141	Right-handed alpha
Helix 187	AU7	7	144	148	Right-handed 310
Helix 188	AU8	7	179	212	Right-handed alpha
Helix 189	AU9	7	214	225	Right-handed alpha
Helix 190	AV1	7	230	234	Right-handed 310
Helix 191	AV2	8	42	47	Right-handed alpha
Helix 192	AV3	8	58	61	Right-handed 310
Helix 193	AV4	8	62	94	Right-handed alpha
Helix 194	AV5	8	103	105	Right-handed 310
Helix 195	AV6	8	106	115	Right-handed alpha
Helix 196	AV7	8	118	143	Right-handed alpha
Helix 197	AV8	8	155	160	Right-handed 310
Helix 198	AV9	8	184	213	Right-handed alpha
Helix 199	AW1	8	216	227	Right-handed alpha
Helix 200	AW2	9	61	90	Right-handed alpha
Helix 201	AW3	9	97	101	Right-handed 310
Helix 202	AW4	9	110	131	Right-handed alpha
Helix 203	AW5	9	151	180	Right-handed alpha
Helix 204	AW6	9	182	192	Right-handed alpha
Helix 205	AW7	9	198	205	Right-handed alpha
Helix 206	AW8	a	67	98	Right-handed alpha
Helix 207	AW9	a	107	112	Right-handed alpha
Helix 208	AX1	a	126	146	Right-handed alpha
Helix 209	AX2	a	169	198	Right-handed alpha
Helix 210	AX3	a	201	212	Right-handed alpha

There are 19 sheets in PDB entry 7D0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	136	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	622	first strand
Strand 2	A	627	628	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	F	131	134	parallel
Strand 3	F	124	125	anti-parallel
Strand 4	F	68	69	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	87	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	147	149	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	103	106	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	95	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	L	149	150	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	61	first strand
Strand 2	K	67	69	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	45	first strand
Strand 2	L	55	56	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	116	117	first strand
Strand 2	1	122	123	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	239	241	first strand
Strand 2	5	246	248	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	222	223	first strand
Strand 2	6	228	229	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	116	117	first strand
Strand 2	a	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0J