Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D0K entry

There are 2 chains in PDB entry 7D0K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 789	SER 1640
B	PRO 789	THR 1682

There are 66 helices in PDB entry 7D0K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	793	799	Right-handed alpha
Helix 2	AA2	A	802	807	Right-handed alpha
Helix 3	AA3	A	818	827	Right-handed alpha
Helix 4	AA4	A	906	919	Right-handed alpha
Helix 5	AA5	A	935	944	Right-handed alpha
Helix 6	AA6	A	953	968	Right-handed alpha
Helix 7	AA7	A	969	971	Right-handed 310
Helix 8	AA8	A	972	976	Right-handed 310
Helix 9	AA9	A	977	982	Right-handed 310
Helix 10	AB1	A	1047	1052	Right-handed alpha
Helix 11	AB2	A	1056	1068	Right-handed alpha
Helix 12	AB3	A	1099	1102	Right-handed 310
Helix 13	AB4	A	1125	1133	Right-handed alpha
Helix 14	AB5	A	1170	1179	Right-handed alpha
Helix 15	AB6	A	1183	1198	Right-handed alpha
Helix 16	AB7	A	1200	1216	Right-handed alpha
Helix 17	AB8	A	1272	1281	Right-handed alpha
Helix 18	AB9	A	1293	1297	Right-handed 310
Helix 19	AC1	A	1305	1327	Right-handed alpha
Helix 20	AC2	A	1331	1338	Right-handed alpha
Helix 21	AC3	A	1344	1354	Right-handed alpha
Helix 22	AC4	A	1369	1381	Right-handed alpha
Helix 23	AC5	A	1400	1404	Right-handed 310
Helix 24	AC6	A	1431	1439	Right-handed alpha
Helix 25	AC7	A	1443	1447	Right-handed 310
Helix 26	AC8	A	1473	1476	Right-handed 310
Helix 27	AC9	A	1501	1514	Right-handed alpha
Helix 28	AD1	A	1582	1590	Right-handed alpha
Helix 29	AD2	A	1620	1626	Right-handed alpha
Helix 30	AD3	A	1626	1640	Right-handed alpha
Helix 31	AD4	B	793	799	Right-handed alpha
Helix 32	AD5	B	802	807	Right-handed alpha
Helix 33	AD6	B	819	827	Right-handed alpha
Helix 34	AD7	B	834	839	Right-handed alpha
Helix 35	AD8	B	840	843	Right-handed 310
Helix 36	AD9	B	906	920	Right-handed alpha
Helix 37	AE1	B	930	934	Right-handed 310
Helix 38	AE2	B	935	943	Right-handed alpha
Helix 39	AE3	B	953	968	Right-handed alpha
Helix 40	AE4	B	969	971	Right-handed 310
Helix 41	AE5	B	972	976	Right-handed 310
Helix 42	AE6	B	977	982	Right-handed 310
Helix 43	AE7	B	1031	1035	Right-handed 310
Helix 44	AE8	B	1036	1043	Right-handed 310
Helix 45	AE9	B	1056	1067	Right-handed alpha
Helix 46	AF1	B	1125	1132	Right-handed alpha
Helix 47	AF2	B	1170	1180	Right-handed alpha
Helix 48	AF3	B	1183	1196	Right-handed alpha
Helix 49	AF4	B	1200	1216	Right-handed alpha
Helix 50	AF5	B	1235	1240	Right-handed alpha
Helix 51	AF6	B	1272	1281	Right-handed alpha
Helix 52	AF7	B	1305	1327	Right-handed alpha
Helix 53	AF8	B	1331	1338	Right-handed alpha
Helix 54	AF9	B	1345	1353	Right-handed alpha
Helix 55	AG1	B	1369	1382	Right-handed alpha
Helix 56	AG2	B	1400	1404	Right-handed 310
Helix 57	AG3	B	1431	1438	Right-handed alpha
Helix 58	AG4	B	1443	1447	Right-handed 310
Helix 59	AG5	B	1462	1466	Right-handed 310
Helix 60	AG6	B	1483	1489	Right-handed 310
Helix 61	AG7	B	1501	1513	Right-handed alpha
Helix 62	AG8	B	1578	1590	Right-handed alpha
Helix 63	AG9	B	1620	1638	Right-handed alpha
Helix 64	AH1	B	1647	1653	Right-handed alpha
Helix 65	AH2	B	1657	1660	Right-handed 310
Helix 66	AH3	B	1661	1666	Right-handed alpha

There are 29 sheets in PDB entry 7D0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	864	first strand
Strand 2	A	845	851	anti-parallel
Strand 3	A	1599	1600	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	1091	1097	anti-parallel
Strand 3	A	1076	1083	anti-parallel
Strand 4	A	989	990	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	1091	1097	anti-parallel
Strand 3	A	1076	1083	anti-parallel
Strand 4	A	997	1000	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	877	first strand
Strand 2	A	880	883	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	890	first strand
Strand 2	A	1250	1251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	893	896	first strand
Strand 2	A	1266	1269	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	905	first strand
Strand 2	A	1284	1285	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1025	1029	first strand
Strand 2	A	1109	1113	parallel
Strand 3	A	1044	1045	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1218	1219	first strand
Strand 2	A	1241	1242	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1222	1224	first strand
Strand 2	A	1537	1539	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1357	1358	first strand
Strand 2	A	1364	1365	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1388	1391	first strand
Strand 2	A	1396	1399	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1414	1415	first strand
Strand 2	A	1421	1422	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1468	1472	first strand
Strand 2	A	1477	1482	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1518	1520	first strand
Strand 2	A	1574	1576	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	864	first strand
Strand 2	B	845	851	anti-parallel
Strand 3	B	1599	1600	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	1090	1097	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	989	990	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	1090	1097	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	997	1000	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	877	first strand
Strand 2	B	880	883	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1102	1103	first strand
Strand 2	B	891	896	parallel
Strand 3	B	1266	1269	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	905	first strand
Strand 2	B	1284	1286	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1029	first strand
Strand 2	B	1109	1113	parallel
Strand 3	B	1044	1045	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1218	1219	first strand
Strand 2	B	1241	1242	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1222	1224	first strand
Strand 2	B	1537	1539	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1358	1360	first strand
Strand 2	B	1363	1365	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1388	1392	first strand
Strand 2	B	1395	1399	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1414	1415	first strand
Strand 2	B	1421	1422	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1468	1470	first strand
Strand 2	B	1479	1482	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1518	1520	first strand
Strand 2	B	1574	1576	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D0K

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0K