Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7D0L entry

There are 2 chains in PDB entry 7D0L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 789	SER 1640
B	PRO 789	THR 1682

There are 72 helices in PDB entry 7D0L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	794	799	Right-handed alpha
Helix 2	AA2	A	802	807	Right-handed alpha
Helix 3	AA3	A	818	827	Right-handed alpha
Helix 4	AA4	A	906	918	Right-handed alpha
Helix 5	AA5	A	920	925	Right-handed 310
Helix 6	AA6	A	935	943	Right-handed alpha
Helix 7	AA7	A	953	968	Right-handed alpha
Helix 8	AA8	A	969	971	Right-handed 310
Helix 9	AA9	A	972	976	Right-handed 310
Helix 10	AB1	A	977	982	Right-handed 310
Helix 11	AB2	A	1039	1043	Right-handed 310
Helix 12	AB3	A	1047	1052	Right-handed alpha
Helix 13	AB4	A	1056	1068	Right-handed alpha
Helix 14	AB5	A	1099	1102	Right-handed 310
Helix 15	AB6	A	1125	1131	Right-handed alpha
Helix 16	AB7	A	1171	1179	Right-handed alpha
Helix 17	AB8	A	1183	1198	Right-handed alpha
Helix 18	AB9	A	1202	1216	Right-handed alpha
Helix 19	AC1	A	1272	1281	Right-handed alpha
Helix 20	AC2	A	1293	1297	Right-handed 310
Helix 21	AC3	A	1305	1328	Right-handed alpha
Helix 22	AC4	A	1331	1337	Right-handed alpha
Helix 23	AC5	A	1344	1355	Right-handed alpha
Helix 24	AC6	A	1369	1382	Right-handed alpha
Helix 25	AC7	A	1400	1404	Right-handed 310
Helix 26	AC8	A	1431	1439	Right-handed alpha
Helix 27	AC9	A	1443	1447	Right-handed 310
Helix 28	AD1	A	1462	1465	Right-handed 310
Helix 29	AD2	A	1473	1476	Right-handed 310
Helix 30	AD3	A	1501	1514	Right-handed alpha
Helix 31	AD4	A	1553	1558	Right-handed 310
Helix 32	AD5	A	1582	1590	Right-handed alpha
Helix 33	AD6	A	1620	1626	Right-handed alpha
Helix 34	AD7	A	1626	1640	Right-handed alpha
Helix 35	AD8	B	793	799	Right-handed alpha
Helix 36	AD9	B	802	807	Right-handed alpha
Helix 37	AE1	B	819	824	Right-handed alpha
Helix 38	AE2	B	834	839	Right-handed alpha
Helix 39	AE3	B	906	920	Right-handed alpha
Helix 40	AE4	B	935	942	Right-handed alpha
Helix 41	AE5	B	953	968	Right-handed alpha
Helix 42	AE6	B	969	971	Right-handed 310
Helix 43	AE7	B	972	976	Right-handed 310
Helix 44	AE8	B	978	982	Right-handed 310
Helix 45	AE9	B	1031	1035	Right-handed 310
Helix 46	AF1	B	1036	1040	Right-handed 310
Helix 47	AF2	B	1056	1067	Right-handed alpha
Helix 48	AF3	B	1125	1131	Right-handed alpha
Helix 49	AF4	B	1170	1179	Right-handed alpha
Helix 50	AF5	B	1183	1198	Right-handed alpha
Helix 51	AF6	B	1200	1216	Right-handed alpha
Helix 52	AF7	B	1235	1240	Right-handed alpha
Helix 53	AF8	B	1272	1281	Right-handed alpha
Helix 54	AF9	B	1293	1297	Right-handed 310
Helix 55	AG1	B	1298	1302	Right-handed 310
Helix 56	AG2	B	1305	1313	Right-handed alpha
Helix 57	AG3	B	1314	1328	Right-handed alpha
Helix 58	AG4	B	1331	1337	Right-handed alpha
Helix 59	AG5	B	1344	1353	Right-handed alpha
Helix 60	AG6	B	1369	1382	Right-handed alpha
Helix 61	AG7	B	1400	1404	Right-handed 310
Helix 62	AG8	B	1431	1438	Right-handed alpha
Helix 63	AG9	B	1443	1447	Right-handed 310
Helix 64	AH1	B	1462	1466	Right-handed 310
Helix 65	AH2	B	1484	1489	Right-handed 310
Helix 66	AH3	B	1501	1514	Right-handed alpha
Helix 67	AH4	B	1578	1590	Right-handed alpha
Helix 68	AH5	B	1620	1626	Right-handed alpha
Helix 69	AH6	B	1627	1639	Right-handed alpha
Helix 70	AH7	B	1647	1652	Right-handed alpha
Helix 71	AH8	B	1657	1660	Right-handed 310
Helix 72	AH9	B	1661	1666	Right-handed alpha

There are 27 sheets in PDB entry 7D0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	857	864	first strand
Strand 2	A	845	851	anti-parallel
Strand 3	A	1599	1601	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	1091	1097	anti-parallel
Strand 3	A	1076	1083	anti-parallel
Strand 4	A	989	990	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	872	first strand
Strand 2	A	1091	1097	anti-parallel
Strand 3	A	1076	1083	anti-parallel
Strand 4	A	997	1000	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	876	877	first strand
Strand 2	A	880	881	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	890	first strand
Strand 2	A	1250	1251	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	894	896	first strand
Strand 2	A	1267	1269	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	905	first strand
Strand 2	A	1284	1285	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1044	1045	first strand
Strand 2	A	1109	1113	parallel
Strand 3	A	1025	1029	parallel
Strand 4	A	1169	1170	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1217	1219	first strand
Strand 2	A	1241	1243	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1222	1224	first strand
Strand 2	A	1537	1539	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1388	1392	first strand
Strand 2	A	1395	1399	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1414	1415	first strand
Strand 2	A	1421	1422	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1467	1472	first strand
Strand 2	A	1477	1483	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1518	1520	first strand
Strand 2	A	1574	1576	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	857	864	first strand
Strand 2	B	845	851	anti-parallel
Strand 3	B	1599	1600	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	1090	1097	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	989	990	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	872	first strand
Strand 2	B	1090	1097	anti-parallel
Strand 3	B	1076	1083	anti-parallel
Strand 4	B	997	1000	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	874	877	first strand
Strand 2	B	880	883	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1102	1103	first strand
Strand 2	B	891	896	parallel
Strand 3	B	1266	1269	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	903	905	first strand
Strand 2	B	1284	1286	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1029	first strand
Strand 2	B	1109	1113	parallel
Strand 3	B	1044	1045	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1218	1219	first strand
Strand 2	B	1241	1242	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1222	1224	first strand
Strand 2	B	1537	1539	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1358	1360	first strand
Strand 2	B	1363	1365	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1388	1392	first strand
Strand 2	B	1395	1399	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1468	1469	first strand
Strand 2	B	1481	1482	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1518	1520	first strand
Strand 2	B	1574	1576	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7D0L

Analysis of interatomic Contacts of Structural Units in PDB entry:
7D0L