Analysis of interatomic Contacts of Structural Units in PDB entry:
7D17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D17 entry

There is 1 chain in PDB entry 7D17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29ILE 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7D17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 55Right-handed alpha
Helix 2
AA2
A
58 67Right-handed alpha
Helix 3
AA3
A
77 94Right-handed alpha
Helix 4
AA4
A
149 164Right-handed alpha
Helix 5
AA5
A
200 212Right-handed alpha
Helix 6
AA6
A
251 275Right-handed alpha
Helix 7
AA7
A
300 306Right-handed alpha
Helix 8
AA8
A
328 332Right-handed 310
Helix 9
AA9
A
333 353Right-handed alpha
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There are 2 sheets in PDB entry 7D17. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 107first strand
Strand 2
A
110 120anti-parallel
Strand 3
A
179 185anti-parallel
Strand 4
A
128 134parallel
Strand 5
A
226 233parallel
Strand 6
A
310 314parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 246first strand
Strand 2
A
287 293parallel
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