Analysis of interatomic Contacts of Structural Units in PDB entry:
7D1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D1B entry

There is 1 chain in PDB entry 7D1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27LYS 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7D1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 90Right-handed alpha
Helix 2
AA2
A
97 114Right-handed alpha
Helix 3
AA3
A
168 174Right-handed 310
Helix 4
AA4
A
182 194Right-handed alpha
Helix 5
AA5
A
195 199Right-handed 310
Helix 6
AA6
A
231 245Right-handed alpha
Helix 7
AA7
A
246 248Right-handed 310
Helix 8
AA8
A
271 278Right-handed alpha
Helix 9
AA9
A
278 293Right-handed alpha
Helix 10
AB1
A
312 319Right-handed alpha
Helix 11
AB2
A
340 344Right-handed 310
Helix 12
AB3
A
345 363Right-handed alpha
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There are 2 sheets in PDB entry 7D1B. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 125first strand
Strand 2
A
134 143anti-parallel
Strand 3
A
204 210anti-parallel
Strand 4
A
149 156parallel
Strand 5
A
251 258parallel
Strand 6
A
323 326parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
297 301parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il