Analysis of interatomic Contacts of Structural Units in PDB entry:
7D1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D1D entry

There is 1 chain in PDB entry 7D1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 38LYS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7D1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 58Right-handed alpha
Helix 2
AA2
A
66 83Right-handed alpha
Helix 3
AA3
A
136 140Right-handed 310
Helix 4
AA4
A
150 167Right-handed alpha
Helix 5
AA5
A
194 198Right-handed 310
Helix 6
AA6
A
199 208Right-handed alpha
Helix 7
AA7
A
235 242Right-handed alpha
Helix 8
AA8
A
242 256Right-handed alpha
Helix 9
AA9
A
272 280Right-handed alpha
Helix 10
AB1
A
307 311Right-handed 310
Helix 11
AB2
A
312 330Right-handed alpha
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There are 2 sheets in PDB entry 7D1D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 95first strand
Strand 2
A
101 110anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
118 124parallel
Strand 5
A
218 222parallel
Strand 6
A
285 288parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
262 266parallel
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