Analysis of interatomic Contacts of Structural Units in PDB entry:
7D1G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D1G entry

There is 1 chain in PDB entry 7D1G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7D1G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
36 46Right-handed alpha
Helix 3
AA3
A
78 82Right-handed 310
Helix 4
AA4
A
101 106Right-handed alpha
Helix 5
AA5
A
106 111Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
149 167Right-handed alpha
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
A
215 219Right-handed 310
Helix 10
AB1
A
220 224Right-handed 310
Helix 11
AB2
A
253 264Right-handed alpha
Helix 12
AB3
A
277 282Right-handed 310
Helix 13
AB4
A
293 295Right-handed 310
Helix 14
AB5
A
315 331Right-handed alpha
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There are 3 sheets in PDB entry 7D1G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
26 32parallel
Strand 5
A
2 7parallel
Strand 6
A
91 94parallel
Strand 7
A
115 118parallel
Strand 8
A
144 146parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
227 234anti-parallel
Strand 3
A
170 178parallel
Strand 4
A
240 247anti-parallel
Strand 5
A
303 312anti-parallel
Strand 6
A
288 291anti-parallel
Strand 7
A
269 272parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
227 234anti-parallel
Strand 3
A
170 178parallel
Strand 4
A
240 247anti-parallel
Strand 5
A
303 312anti-parallel
Strand 6
A
296 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il