Analysis of interatomic Contacts of Structural Units in PDB entry:
7D1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D1I entry

There are 3 chains in PDB entry 7D1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9MET 365
B
 PRO 9MET 365
C
 PRO 9MET 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 7D1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
79 98Right-handed alpha
Helix 4
AA4
A
110 122Right-handed alpha
Helix 5
AA5
A
135 142Right-handed alpha
Helix 6
AA6
A
181 187Right-handed alpha
Helix 7
AA7
A
204 209Right-handed alpha
Helix 8
AA8
A
210 216Right-handed alpha
Helix 9
AA9
A
232 241Right-handed alpha
Helix 10
AB1
A
257 265Right-handed alpha
Helix 11
AB2
A
274 284Right-handed alpha
Helix 12
AB3
A
298 311Right-handed alpha
Helix 13
AB4
A
322 334Right-handed alpha
Helix 14
AB5
A
335 349Right-handed alpha
Helix 15
AB6
A
354 364Right-handed alpha
Helix 16
AB7
B
22 36Right-handed alpha
Helix 17
AB8
B
49 54Right-handed alpha
Helix 18
AB9
B
79 98Right-handed alpha
Helix 19
AC1
B
110 122Right-handed alpha
Helix 20
AC2
B
135 142Right-handed alpha
Helix 21
AC3
B
152 156Right-handed 310
Helix 22
AC4
B
204 216Right-handed alpha
Helix 23
AC5
B
229 231Right-handed 310
Helix 24
AC6
B
232 242Right-handed alpha
Helix 25
AC7
B
257 265Right-handed alpha
Helix 26
AC8
B
273 283Right-handed alpha
Helix 27
AC9
B
298 311Right-handed alpha
Helix 28
AD1
B
322 334Right-handed alpha
Helix 29
AD2
B
335 349Right-handed alpha
Helix 30
AD3
B
353 364Right-handed alpha
Helix 31
AD4
C
19 36Right-handed alpha
Helix 32
AD5
C
49 55Right-handed alpha
Helix 33
AD6
C
79 98Right-handed alpha
Helix 34
AD7
C
110 122Right-handed alpha
Helix 35
AD8
C
135 142Right-handed alpha
Helix 36
AD9
C
143 145Right-handed 310
Helix 37
AE1
C
181 187Right-handed alpha
Helix 38
AE2
C
204 216Right-handed alpha
Helix 39
AE3
C
232 242Right-handed alpha
Helix 40
AE4
C
257 265Right-handed alpha
Helix 41
AE5
C
274 283Right-handed alpha
Helix 42
AE6
C
300 310Right-handed alpha
Helix 43
AE7
C
322 334Right-handed alpha
Helix 44
AE8
C
335 350Right-handed alpha
Helix 45
AE9
C
353 364Right-handed alpha
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There are 6 sheets in PDB entry 7D1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
39 44parallel
Strand 3
A
11 15parallel
Strand 4
A
102 105parallel
Strand 5
A
125 129parallel
Strand 6
A
147 150parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
223 227parallel
Strand 3
A
196 198parallel
Strand 4
A
267 270parallel
Strand 5
A
286 289parallel
Strand 6
A
313 315parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
39 43parallel
Strand 3
B
11 15parallel
Strand 4
B
102 105parallel
Strand 5
B
125 129parallel
Strand 6
B
147 150parallel
Strand 7
B
161 163parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
222 227parallel
Strand 3
B
193 198parallel
Strand 4
B
267 270parallel
Strand 5
B
287 289parallel
Strand 6
B
313 315parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 63first strand
Strand 2
C
39 44parallel
Strand 3
C
11 15parallel
Strand 4
C
102 105parallel
Strand 5
C
125 129parallel
Strand 6
C
147 150parallel
Strand 7
C
161 163parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 252first strand
Strand 2
C
222 227parallel
Strand 3
C
193 198parallel
Strand 4
C
267 270parallel
Strand 5
C
287 289parallel
Strand 6
C
314 315parallel
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