Analysis of interatomic Contacts of Structural Units in PDB entry:
7D1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D1L entry

There are 4 chains in PDB entry 7D1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 9ASN 92
B
 TYR 8ASN 92
C
 MSE 200GLU 282
D
 MSE 200GLU 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7D1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 35Right-handed alpha
Helix 2
AA2
A
62 72Right-handed alpha
Helix 3
AA3
B
25 35Right-handed alpha
Helix 4
AA4
B
62 72Right-handed alpha
Helix 5
AA5
C
200 202Right-handed 310
Helix 6
AA6
C
215 223Right-handed alpha
Helix 7
AA7
C
245 257Right-handed alpha
Helix 8
AA8
D
200 202Right-handed 310
Helix 9
AA9
D
215 223Right-handed alpha
Helix 10
AB1
D
245 257Right-handed alpha
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There are 6 sheets in PDB entry 7D1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
53 60anti-parallel
Strand 3
A
14 21anti-parallel
Strand 4
A
84 89anti-parallel
Strand 5
A
77 79anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
53 60anti-parallel
Strand 3
B
14 21anti-parallel
Strand 4
B
84 89anti-parallel
Strand 5
B
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 235first strand
Strand 2
C
238 243anti-parallel
Strand 3
C
204 208anti-parallel
Strand 4
C
268 270anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
260 262first strand
Strand 2
C
265 266anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
228 235first strand
Strand 2
D
238 243anti-parallel
Strand 3
D
204 208anti-parallel
Strand 4
D
268 271anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
260 262first strand
Strand 2
D
265 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il