Analysis of interatomic Contacts of Structural Units in PDB entry:
7D1X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D1X entry

There are 2 chains in PDB entry 7D1X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6GLU 282
B
 GLU 4PHE 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7D1X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
46 59Right-handed alpha
Helix 3
AA3
A
63 68Right-handed alpha
Helix 4
AA4
A
70 75Right-handed alpha
Helix 5
AA5
A
82 88Right-handed alpha
Helix 6
AA6
A
101 105Right-handed 310
Helix 7
AA7
A
106 112Right-handed 310
Helix 8
AA8
A
122 136Right-handed alpha
Helix 9
AA9
A
139 143Right-handed 310
Helix 10
AB1
A
145 155Right-handed alpha
Helix 11
AB2
A
162 172Right-handed alpha
Helix 12
AB3
A
184 190Right-handed alpha
Helix 13
AB4
A
191 203Right-handed alpha
Helix 14
AB5
A
210 218Right-handed alpha
Helix 15
AB6
A
219 225Right-handed alpha
Helix 16
AB7
A
249 254Right-handed 310
Helix 17
AB8
A
256 271Right-handed alpha
Helix 18
AB9
B
19 30Right-handed alpha
Helix 19
AC1
B
46 59Right-handed alpha
Helix 20
AC2
B
62 68Right-handed alpha
Helix 21
AC3
B
70 75Right-handed alpha
Helix 22
AC4
B
82 89Right-handed alpha
Helix 23
AC5
B
106 112Right-handed 310
Helix 24
AC6
B
122 135Right-handed alpha
Helix 25
AC7
B
145 155Right-handed alpha
Helix 26
AC8
B
162 172Right-handed alpha
Helix 27
AC9
B
184 190Right-handed alpha
Helix 28
AD1
B
190 202Right-handed alpha
Helix 29
AD2
B
207 218Right-handed alpha
Helix 30
AD3
B
219 224Right-handed alpha
Helix 31
AD4
B
249 254Right-handed 310
Helix 32
AD5
B
256 271Right-handed alpha
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There are 4 sheets in PDB entry 7D1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
11 12anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
36 41parallel
Strand 3
A
116 120parallel
Strand 4
A
179 183parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
11 13anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
37 40parallel
Strand 3
B
115 120parallel
Strand 4
B
179 183parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il