Analysis of interatomic Contacts of Structural Units in PDB entry:
7D27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D27 entry

There is 1 chain in PDB entry 7D27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7D27. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
16 20Right-handed 310
Helix 3
AA3
A
47 60Right-handed alpha
Helix 4
AA4
A
81 99Right-handed alpha
Helix 5
AA5
A
113 128Right-handed alpha
Helix 6
AA6
A
155 169Right-handed alpha
Helix 7
AA7
A
179 185Right-handed alpha
Helix 8
AA8
A
211 221Right-handed alpha
Helix 9
AA9
A
222 225Right-handed 310
Helix 10
AB1
A
239 249Right-handed alpha
Helix 11
AB2
A
299 316Right-handed alpha
Helix 12
AB3
A
319 327Right-handed alpha
Helix 13
AB4
A
328 330Right-handed 310
Helix 14
AB5
A
354 367Right-handed alpha
Helix 15
AB6
A
384 386Right-handed 310
Helix 16
AB7
A
387 399Right-handed alpha
Helix 17
AB8
A
413 423Right-handed alpha
Helix 18
AB9
A
437 449Right-handed alpha
Helix 19
AC1
A
476 489Right-handed alpha
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There are 5 sheets in PDB entry 7D27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
37 40parallel
Strand 3
A
64 67parallel
Strand 4
A
76 78parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
132 136anti-parallel
Strand 3
A
173 177parallel
Strand 4
A
104 109parallel
Strand 5
A
193 198parallel
Strand 6
A
230 234parallel
Strand 7
A
255 259parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 276first strand
Strand 2
A
279 286anti-parallel
Strand 3
A
289 295anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 341first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
454 458parallel
Strand 4
A
373 377parallel
Strand 5
A
402 404parallel
Strand 6
A
432 434parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 468first strand
Strand 2
A
471 474anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il