Analysis of interatomic Contacts of Structural Units in PDB entry:
7D2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D2F entry

There are 2 chains in PDB entry 7D2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23SER 350
B
 ASP 23HIS 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7D2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 77Right-handed alpha
Helix 2
AA2
A
99 114Right-handed alpha
Helix 3
AA3
A
129 133Right-handed 310
Helix 4
AA4
A
142 146Right-handed 310
Helix 5
AA5
A
154 166Right-handed alpha
Helix 6
AA6
A
169 181Right-handed alpha
Helix 7
AA7
A
182 191Right-handed alpha
Helix 8
AA8
A
198 214Right-handed alpha
Helix 9
AA9
A
222 242Right-handed alpha
Helix 10
AB1
A
243 268Right-handed alpha
Helix 11
AB2
A
280 291Right-handed alpha
Helix 12
AB3
A
330 334Right-handed 310
Helix 13
AB4
A
340 350Right-handed alpha
Helix 14
AB5
B
58 77Right-handed alpha
Helix 15
AB6
B
99 114Right-handed alpha
Helix 16
AB7
B
129 133Right-handed 310
Helix 17
AB8
B
142 146Right-handed 310
Helix 18
AB9
B
154 166Right-handed alpha
Helix 19
AC1
B
169 179Right-handed alpha
Helix 20
AC2
B
181 191Right-handed alpha
Helix 21
AC3
B
196 214Right-handed alpha
Helix 22
AC4
B
222 240Right-handed alpha
Helix 23
AC5
B
243 266Right-handed alpha
Helix 24
AC6
B
280 291Right-handed alpha
Helix 25
AC7
B
330 334Right-handed 310
Helix 26
AC8
B
340 348Right-handed alpha
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There are 4 sheets in PDB entry 7D2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
92 96parallel
Strand 3
A
274 279parallel
Strand 4
A
24 33parallel
Strand 5
A
304 311anti-parallel
Strand 6
A
317 323anti-parallel
Strand 7
A
326 327anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
92 96parallel
Strand 3
A
274 279parallel
Strand 4
A
24 33parallel
Strand 5
A
304 311anti-parallel
Strand 6
A
317 323anti-parallel
Strand 7
A
337 339anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
92 96parallel
Strand 3
B
274 279parallel
Strand 4
B
24 33parallel
Strand 5
B
304 311anti-parallel
Strand 6
B
317 323anti-parallel
Strand 7
B
326 327anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
92 96parallel
Strand 3
B
274 279parallel
Strand 4
B
24 33parallel
Strand 5
B
304 311anti-parallel
Strand 6
B
317 323anti-parallel
Strand 7
B
337 339anti-parallel
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