Analysis of interatomic Contacts of Structural Units in PDB entry:
7D2R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D2R entry

There is 1 chain in PDB entry 7D2R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12SER 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7D2R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
72 83Right-handed alpha
Helix 3
AA3
A
97 110Right-handed alpha
Helix 4
AA4
A
120 129Right-handed alpha
Helix 5
AA5
A
160 168Right-handed alpha
Helix 6
AA6
A
172 189Right-handed alpha
Helix 7
AA7
A
209 222Right-handed alpha
Helix 8
AA8
A
248 265Right-handed alpha
Helix 9
AA9
A
274 278Right-handed 310
Helix 10
AB1
A
292 302Right-handed alpha
Helix 11
AB2
A
313 322Right-handed alpha
Helix 12
AB3
A
327 336Right-handed 310
Helix 13
AB4
A
352 365Right-handed alpha
Helix 14
AB5
A
375 379Right-handed 310
Helix 15
AB6
A
381 396Right-handed alpha
Helix 16
AB7
A
424 435Right-handed alpha
Helix 17
AB8
A
453 465Right-handed alpha
Helix 18
AB9
A
480 490Right-handed alpha
Helix 19
AC1
A
491 499Right-handed alpha
Helix 20
AC2
A
528 540Right-handed alpha
Helix 21
AC3
A
547 558Right-handed alpha
Helix 22
AC4
A
565 569Right-handed 310
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There are 5 sheets in PDB entry 7D2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
89 92parallel
Strand 4
A
61 63parallel
Strand 5
A
21 27parallel
Strand 6
A
132 135anti-parallel
Strand 7
A
139 142anti-parallel
Strand 8
A
147 148anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
323 325anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
200 202parallel
Strand 3
A
289 290parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
370 373parallel
Strand 3
A
339 343parallel
Strand 4
A
419 423parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 504first strand
Strand 2
A
474 479parallel
Strand 3
A
444 452parallel
Strand 4
A
523 526parallel
Strand 5
A
542 545parallel
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