Analysis of interatomic Contacts of Structural Units in PDB entry:
7D2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D2T entry

There are 4 chains in PDB entry 7D2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5GLN 251
B
 GLY 189LEU 318
C
 LEU 5GLN 251
D
 GLY 189LYS 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7D2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
56 62Right-handed 310
Helix 5
AA5
A
79 85Right-handed 310
Helix 6
AA6
A
104 108Right-handed 310
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
129 133Right-handed 310
Helix 9
AA9
A
150 156Right-handed 310
Helix 10
AB1
A
173 179Right-handed 310
Helix 11
AB2
A
196 202Right-handed 310
Helix 12
AB3
A
219 229Right-handed alpha
Helix 13
AB4
A
229 238Right-handed alpha
Helix 14
AB5
A
239 251Right-handed alpha
Helix 15
AB6
B
240 249Right-handed alpha
Helix 16
AB7
B
301 306Right-handed alpha
Helix 17
AB8
B
308 318Right-handed alpha
Helix 18
AB9
C
6 15Right-handed alpha
Helix 19
AC1
C
29 33Right-handed 310
Helix 20
AC2
C
35 39Right-handed 310
Helix 21
AC3
C
56 62Right-handed 310
Helix 22
AC4
C
79 85Right-handed 310
Helix 23
AC5
C
104 108Right-handed 310
Helix 24
AC6
C
122 126Right-handed 310
Helix 25
AC7
C
129 133Right-handed 310
Helix 26
AC8
C
150 156Right-handed 310
Helix 27
AC9
C
173 179Right-handed 310
Helix 28
AD1
C
196 202Right-handed 310
Helix 29
AD2
C
219 229Right-handed alpha
Helix 30
AD3
C
229 238Right-handed alpha
Helix 31
AD4
C
239 251Right-handed alpha
Helix 32
AD5
D
213 217Right-handed 310
Helix 33
AD6
D
240 249Right-handed alpha
Helix 34
AD7
D
301 306Right-handed alpha
Helix 35
AD8
D
308 317Right-handed alpha
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There are 10 sheets in PDB entry 7D2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
44 46parallel
Strand 3
A
67 69parallel
Strand 4
A
90 92parallel
Strand 5
A
113 115parallel
Strand 6
A
138 140parallel
Strand 7
A
161 163parallel
Strand 8
A
184 186parallel
Strand 9
A
210 212parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
210 212anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
237 239anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
269 272anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
297 300anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
44 46parallel
Strand 3
C
67 69parallel
Strand 4
C
90 92parallel
Strand 5
C
113 115parallel
Strand 6
C
138 140parallel
Strand 7
C
161 163parallel
Strand 8
C
184 186parallel
Strand 9
C
210 212parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
205 207first strand
Strand 2
D
210 212anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
232 234first strand
Strand 2
D
237 239anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
263 266first strand
Strand 2
D
269 272anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
291 294first strand
Strand 2
D
297 300anti-parallel
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