Analysis of interatomic Contacts of Structural Units in PDB entry:
7D30


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D30 entry

There are 2 chains in PDB entry 7D30 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1ALA 1115
B
 ASN 334GLN 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7D30. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 65Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
1028 1032Right-handed 310
Helix 4
AA4
A
1062 1065Right-handed 310
Helix 5
AA5
A
1087 1091Right-handed 310
Helix 6
AA6
B
337 344Right-handed alpha
Helix 7
AA7
B
383 389Right-handed 310
Helix 8
AA8
B
405 410Right-handed 310
Helix 9
AA9
B
416 422Right-handed alpha
Helix 10
AB1
B
438 443Right-handed alpha
Helix 11
AB2
B
502 505Right-handed 310
Helix 12
AB3
B
533 538Right-handed 310
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There are 8 sheets in PDB entry 7D30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
115 120parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1000 1001first strand
Strand 2
B
376 380anti-parallel
Strand 3
B
431 437anti-parallel
Strand 4
B
507 517anti-parallel
Strand 5
B
393 403anti-parallel
Strand 6
B
354 358anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1003 1007first strand
Strand 2
A
1018 1025anti-parallel
Strand 3
A
1078 1083anti-parallel
Strand 4
A
1068 1073anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1013first strand
Strand 2
A
1109 1114parallel
Strand 3
A
1092 1099anti-parallel
Strand 4
A
1034 1039anti-parallel
Strand 5
A
1046 1051anti-parallel
Strand 6
A
1058 1060anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1013first strand
Strand 2
A
1109 1114parallel
Strand 3
A
1092 1099anti-parallel
Strand 4
A
1103 1105anti-parallel
Strand 5
B
368 370parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
492 494anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 474first strand
Strand 2
B
488 489anti-parallel
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