Analysis of interatomic Contacts of Structural Units in PDB entry:
7D3A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7D3A entry

There is 1 chain in PDB entry 7D3A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 7D3A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 29Right-handed alpha
Helix 2
AA2
A
39 41Right-handed 310
Helix 3
AA3
A
69 80Right-handed alpha
Helix 4
AA4
A
95 104Right-handed alpha
Helix 5
AA5
A
105 110Right-handed alpha
Helix 6
AA6
A
110 124Right-handed alpha
Helix 7
AA7
A
130 135Right-handed 310
Helix 8
AA8
A
152 163Right-handed alpha
Helix 9
AA9
A
179 182Right-handed 310
Helix 10
AB1
A
183 203Right-handed alpha
Helix 11
AB2
A
256 260Right-handed 310
Helix 12
AB3
A
264 286Right-handed alpha
Helix 13
AB4
A
288 302Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 7D3A. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
2 7parallel
Strand 3
A
82 88parallel
Strand 4
A
138 144parallel
Strand 5
A
167 174parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
230 233anti-parallel
Strand 3
A
239 245anti-parallel
Strand 4
A
248 252anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il